Evidence map›Paper›PMID 21035508›Full record

ArticleMolecular and biochemical parasitology2011

An insertional trap for conditional gene expression in Toxoplasma gondii: identification of TAF250 as an essential gene.

Lauren Jammallo, Keith Eidell, Paul H Davis, Fay J Dufort, Courtney Cronin, Sivasakthivel Thirugnanam, Thomas C Chiles, David S Roos, Marc-Jan Gubbels

Open access · greenAbstract read
In one paragraph

Article in Molecular and biochemical parasitology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Toxoplasma histone acetylation remodelers as novel drug targets.Expert review of anti-infective therapy · 2012
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lauren JammalloDepartment of Biology, Boston College, Chestnut Hill, MA, USA.
Keith Eidell
Paul H Davis
Fay J Dufort
Courtney Cronin
Sivasakthivel Thirugnanam
Thomas C Chiles
David S Roos
Marc-Jan Gubbels
Boston College · USUniversity of Pennsylvania · US

Funding

ZINC FINGER-INSPIRED FLUORESCENT CHEMOSENSORSP20RR016469 · NCRR · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI TURPEN, JAMES B · 2001 to 2011
$36.2M
GENETIC DISSECTION OF TOXOPLASMA GONDIIR37AI028724 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROOS, DAVID S. · 1999 to 2008
$4.3M
Molecular Dissection of Early Toxoplasma gondii Bradyzoite DifferentiationF32AI077268 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DAVIS, PAUL H · 2008 to 2010
$112k
FOLATE METABOLISM AND DRUG RESISTANCE IN TOXOPLASMAR01AI028724 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROOS, DAVID S. · 1989 to 1997
–
NCRR NIH HHS P20 RR016469NCRR NIH HHS RR016469NIAID NIH HHS AI028724NIAID NIH HHS AI077268NIAID NIH HHS F32 AI077268NIAID NIH HHS R37 AI028724
6 · The paper itself

Abstract

Toxoplasmosis is characterized by fast lytic replication cycles leading to severe tissue lesions. Successful host cell invasion is essential for pathogenesis. The division cycle of Toxoplasma gondii is characterized by an unusual cell cycle progression and a distinct internal budding mechanism. To identify essential genes involved in the lytic cycle we devised an insertional gene trapping strategy using the Tet-transactivator system. In essence, a random, active promoter is displaced with a tetracycline regulatable promoter, which if in an essential gene, will result in a conditionally lethal phenotype upon tetracycline addition. We isolated eight mutants with growth defects, two of which displayed modest invasion defects, one of which had an additional cell cycle defect. The trapped loci were identified using expression microarrays, exploiting the tetracycline dependent expression of the trapped genes. In mutant 3.3H6 we identified TCP-1, a component of the chaperonin protein folding machinery under the control of the Tet promoter. However, this gene was not critical for growth of mutant 3.3H6. Subsequently, we identified a suppressor gene encoding a protein with a hypothetical function by guided cosmid complementation. In mutant 4.3B13, we identified TAF250, an RNA polymerase II complex component, as the trapped, essential gene. Furthermore, by mapping the plasmid insertion boundaries we identified multiple genomic rearrangements, which hint at a potential replication dependent DNA repair mechanism. Furthermore, these rearrangements provide an explanation for inconsistent locus rescue results observed by molecular biological approaches. Taken together, we have added an approach to identify and study essential genes in Toxoplasma.

Indexed as

Gene ExpressionGenes, EssentialGene Expression ProfilingGenetics, MicrobialGenetic VectorsMicroarray AnalysisPlasmidsTetracyclineToxoplasmaTranscription Factor TFIIDTetracyclineTranscription Factor TFIID

Identifiers

PMID21035508
PMCPMC3053073
OpenAlexW2072117094

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.