ArticleGenome biology2010
Rapid haplotype inference for nuclear families.
Article in Genome biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed.
- haploMAGIC: accurate phasing and detection of recombination in multiparental populations despite genotyping errors.G3 (Bethesda, Md.) · 2024Article
- Reconstructing parent genomes using siblings and other relatives.bioRxiv : the preprint server for biology · 2024Article
- Genetic polyploid phasing from low-depth progeny samples.iScience · 2022Article
- Benchmarking phasing software with a whole-genome sequenced cattle pedigree.BMC genomics · 2022Article
- Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets.Nature communications · 2020Article
- Crossover interference and sex-specific genetic maps shape identical by descent sharing in close relatives.PLoS genetics · 2019Article
- Natural selection interacts with recombination to shape the evolution of hybrid genomes.Science (New York, N.Y.) · 2018Article
- Stable recombination hotspots in birds.Science (New York, N.Y.) · 2015Article
- Genetic loci that regulate ectopic calcification in response to knee trauma in LG/J by SM/J advanced intercross mice.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2015Article
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- Article
- A general approach for haplotype phasing across the full spectrum of relatedness.PLoS genetics · 2014Article
- HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data.PLoS computational biology · 2014Article
- Haplotype phasing after joint estimation of recombination and linkage disequilibrium in breeding populations.Journal of animal science and biotechnology · 2013Article
- iXora: exact haplotype inferencing and trait association.BMC genetics · 2013Article
- Article
- The importance of phase information for human genomics.Nature reviews. Genetics · 2011Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
Abstract
Hapi is a new dynamic programming algorithm that ignores uninformative states and state transitions in order to efficiently compute minimum-recombinant and maximum likelihood haplotypes. When applied to a dataset containing 103 families, Hapi performs 3.8 and 320 times faster than state-of-the-art algorithms. Because Hapi infers both minimum-recombinant and maximum likelihood haplotypes and applies to related individuals, the haplotypes it infers are highly accurate over extended genomic distances.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.