Evidence map›Paper›PMID 21030439›Full record

ArticleNucleic acids research2011

A multivalent DNA aptamer specific for the B-cell receptor on human lymphoma and leukemia.

Prabodhika R Mallikaratchy, Alessandro Ruggiero, Jeffrey R Gardner, Vitaly Kuryavyi, William F Maguire, Mark L Heaney, Michael R McDevitt, Dinshaw J Patel, David A Scheinberg

Abstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed.

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  18. Nucleic Acids Analysis.Science China. Chemistry · 2021
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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Prabodhika R MallikaratchySloan Kettering Institute, 1275 York Ave, New York, New York 10025, USA.
Alessandro Ruggiero
Jeffrey R Gardner
Vitaly Kuryavyi
William F Maguire
Mark L Heaney
Michael R McDevitt
Dinshaw J Patel
David A Scheinberg

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
RECOMBINANT ANTICD33 ANTIBODY FOR AMLR01CA055349 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SCHEINBERG, DAVID A · 1991 to 2020
$6.8M
Molecular Imaging: Training for OncologyR25CA096945 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI HRICAK, HEDVIG · 2002 to 2013
$5.2M
Novel Nano-Constructs to Target and Destroy Tumor NeovasculatureR21CA128406 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI MCDEVITT, MICHAEL R. · 2007 to 2009
$562k
NCI NIH HHS R01 CA055349NCI NIH HHS R01 CA55349NCI NIH HHS R21 CA128406NCI NIH HHS R25T CA096945NIGMS NIH HHS T32 GM007739PHS HHS P01 33049
6 · The paper itself

Abstract

Long-term survival still eludes most patients with leukemia and non-Hodgkin's lymphoma. No approved therapies target the hallmark of the B cell, its mIgM, also known as the B-cell receptor (BCR). Aptamers are small oligonucleotides that can specifically bind to a wide range of target molecules and offer some advantages over antibodies as therapeutic agents. Here, we report the rational engineering of aptamer TD05 into multimeric forms reactive with the BCR that may be useful in biomedical applications. Systematic truncation of TD05 coupled with modification with locked nucleic acids (LNA) increased conformational stability and nuclease resistance. Trimeric and tetrameric versions with optimized polyethyleneglycol (PEG) linker lengths exhibited high avidity at physiological temperatures both in vitro and in vivo. Competition and protease studies showed that the multimeric, optimized aptamer bound to membrane-associated human mIgM, but not with soluble IgM in plasma, allowing the possibility of targeting leukemias and lymphomas in vivo. The B-cell specificity of the multivalent aptamer was confirmed on lymphoma cell lines and fresh clinical leukemia samples. The chemically engineered aptamers, with significantly improved kinetic and biochemical features, unique specificity and desirable pharmacological properties, may be useful in biomedical applications.

Indexed as

AnimalsAptamers, NucleotideCell Line, TumorFemaleHumansImmunoglobulin MLeukemia, B-CellLymphoma, B-CellMiceMice, NudeOligonucleotidesReceptors, Antigen, B-CellAptamers, NucleotideImmunoglobulin Mlocked nucleic acidOligonucleotidesReceptors, Antigen, B-Cell

Identifiers

PMID21030439
PMCPMC3064813

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.