Evidence map›Paper›PMID 21029244›Full record

ArticleBrain pathology (Zurich, Switzerland)2011

The nature and timing of specific copy number changes in the course of molecular progression in diffuse gliomas: further elucidation of their genetic "life story".

Judith W M Jeuken, Angelique Sijben, Fonnet E Bleeker, Sandra H E Boots-Sprenger, Jos Rijntjes, Johanna M M Gijtenbeek, Wolf Mueller, Pieter Wesseling

Abstract read
In one paragraph

Article in Brain pathology (Zurich, Switzerland), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Detection and Correlation of Single and ConcomitantInternational journal of molecular sciences · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Judith W M JeukenDepartment of Pathology, Nijmegen Center for Molecular Life Sciences UMC St Radboud, Nijmegen, The Netherlands. j.jeuken@pathol.umcn.nl
Angelique Sijben
Fonnet E Bleeker
Sandra H E Boots-Sprenger
Jos Rijntjes
Johanna M M Gijtenbeek
Wolf Mueller
Pieter Wesseling

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Up till now, typing and grading of diffuse gliomas is based on histopathological features. However, more objective tools are needed to improve reliable assessment of their biological behavior. We evaluated 331 diffuse gliomas for copy number changes involving 1p, 19q, CDKN2A, PTEN and EGFR(vIII) by Multiplex Ligation-dependent Probe Amplification (MLPA®, Amsterdam, The Netherlands). Specifically based on the co-occurrence of these aberrations we built a model for the timing of the different events and their exact nature (hemi- → homozygous loss; low-level gain → (high-copy) amplification) in the course of molecular progression. The mutation status of IDH1 and TP53 was also evaluated and shown to correlate with the level of molecular progression. The relevance of the proposed model was confirmed by analysis of 36 sets of gliomas and their 39 recurrence(s) whereas survival analysis for anaplastic gliomas confirmed the actual prognostic relevance of detecting molecular malignancy. Moreover, based on our results, molecular diagnostic analysis of 1p/19q can be further improved as different aberrations were identified, some of them being indicative for advanced molecular malignancy rather than for favorable tumor behavior. In conclusion, identification of molecular malignancy as proposed will aid in establishing a risk profile for individual patients and thereby in therapeutic decision making.

Indexed as

Brain NeoplasmsChromosomes, Human, Pair 1Chromosomes, Human, Pair 19Cyclin-Dependent Kinase Inhibitor p16Disease ProgressionDNA Copy Number VariationsErbB ReceptorsGliomaHumansModels, BiologicalNeoplasm ProteinsNucleic Acid Amplification TechniquesPathology, MolecularPTEN PhosphohydrolaseTime FactorsCyclin-Dependent Kinase Inhibitor p16epidermal growth factor receptor VIIIErbB ReceptorsNeoplasm ProteinsPTEN PhosphohydrolasePTEN protein, human

Identifiers

PMID21029244
PMCPMC8094293

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.