Evidence map›Paper›PMID 21028928›Full record

ArticleIET systems biology2009

Quantifying evolvability in small biological networks.

A Mugler, E Ziv, I Nemenman, C H Wiggins

Abstract read
In one paragraph

Article in IET systems biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Parameter Evolvability in Gene Expression Models Drives Phenotypic Adaptation.ALIFE : proceedings of the artificial life conference. International Conference on Artificial Life · 2025
    Article
  2. Article
  3. Statistical method for revealing form-function relations in biological networks.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  4. Spectral solutions to stochastic models of gene expression with bursts and regulation.Physical review. E, Statistical, nonlinear, and soft matter physics · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

A MuglerDepartment of Physics, Columbia University, New York, USA. ajm2121@columbia.edu
E Ziv
I Nemenman
C H Wiggins

Funding

Nation Center: Multi-Scale Study- Cellular Networks(RMI)U54CA121852 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2005 to 2015
$37.4M
Nanomedicine development center for mechanobiologyPN2EY016586 · NEI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DUSTIN, MICHAEL LORAN · 2005 to 2014
$23.0M
System Biology Center in New YorkP50GM071558 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SOBIE, ERIC A · 2007 to 2017
$22.8M
Center for Mechanotransduction and Nanomedicine. (RMI)PN1EY016586 · NEI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SHEETZ, MICHAEL PATRICK · 2004 to 2004
$81k
NCI NIH HHS 1U54CA121852-01A1NCI NIH HHS U54 CA121852NEI NIH HHS 5PN2EY016586-03NEI NIH HHS PN2 EY016586NIGMS NIH HHS 5P50GM071558-02NIGMS NIH HHS P50 GM071558
6 · The paper itself

Abstract

The authors introduce a quantitative measure of the capacity of a small biological network to evolve. The measure is applied to a stochastic description of the experimental setup of Guet et al. (Science 2002, 296, pp. 1466), treating chemical inducers as functional inputs to biochemical networks and the expression of a reporter gene as the functional output. The authors take an information-theoretic approach, allowing the system to set parameters that optimise signal processing ability, thus enumerating each network's highest-fidelity functions. All networks studied are highly evolvable by the measure, meaning that change in function has little dependence on change in parameters. Moreover, each network's functions are connected by paths in the parameter space along which information is not significantly lowered, meaning a network may continuously change its functionality without completely losing it along the way. This property further underscores the evolvability of the networks.

Indexed as

Biological EvolutionModels, BiologicalEvolution, MolecularGene Regulatory NetworksInformation TheoryModels, GeneticSignal TransductionStochastic ProcessesSystems Biology

Identifiers

PMID21028928
PMCPMC2991244

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.