ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2011
Variation of GmIRCHS (Glycine max inverted-repeat CHS pseudogene) is related to tolerance of low temperature-induced seed coat discoloration in yellow soybean.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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21 citing papers in PubMed, 26 citations in OpenAlex.
- The current state of Japanese soybean breeding using DNA marker technology.Breeding science · 2026Article
- Identifying Candidate Genes Related to Soybean (Genes · 2025Article
- Metabolomic and Transcriptomic Analyses of Flavonoid Biosynthesis in Different Colors of Soybean Seed Coats.International journal of molecular sciences · 2024Article
- A novel QTL associated with tolerance to cold-induced seed cracking in the soybean cultivar Toyomizuki.Breeding science · 2023Article
- Progress and Prospects of the Molecular Basis of Soybean Cold Tolerance.Plants (Basel, Switzerland) · 2023Review
- Identification of genetic loci conferring seed coat color based on a high-density map in soybean.Frontiers in plant science · 2022Article
- An advanced systems biology framework of feature engineering for cold tolerance genes discovery from integrated omics and non-omics data in soybean.Frontiers in plant science · 2022Article
- A pubescence color gene enhances tolerance to cold-induced seed cracking in yellow soybean.Breeding science · 2021Article
- Identification and validation of quantitative trait loci associated with seed yield in soybean.Breeding science · 2021Article
- Identifying Wild Versus Cultivated Gene-Alleles Conferring Seed Coat Color and Days to Flowering in Soybean.International journal of molecular sciences · 2021Article
- A major gene for tolerance to cold-induced seed coat discoloration relieves viral seed mottling in soybean.Breeding science · 2020Article
- Impacts of genomic research on soybean improvement in East Asia.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Field assessment of a major QTL associated with tolerance to cold-induced seed coat discoloration in soybean.Breeding science · 2019Article
- Occurrence and tolerance mechanisms of seed cracking under low temperatures in soybean (Glycine max).Planta · 2018Article
- Article
- Characterizing Two Inter-specific Bin Maps for the Exploration of the QTLs/Genes that Confer Three Soybean Evolutionary Traits.Frontiers in plant science · 2016Article
- Quantitative trait loci associated with lodging tolerance in soybean cultivar 'Toyoharuka'.Breeding science · 2014Article
- Method for selection of soybeans tolerant to seed cracking under chilling temperatures.Breeding science · 2014Article
- Seed coat pigmentation in transgenic soybean expressing the silencing suppressor 2b gene of Cucumber mosaic virus.Plant cell reports · 2013Article
- Comparative analysis of the inverted repeat of a chalcone synthase pseudogene between yellow soybean and seed coat pigmented mutants.Breeding science · 2013Article
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Authors and funding
12 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In yellow soybean, seed coat pigmentation is inhibited by post-transcriptional gene silencing (PTGS) of chalcone synthase (CHS) genes. A CHS cluster named GmIRCHS (Glycine max inverted-repeat CHS pseudogene) is suggested to cause PTGS in yellow-hilum cultivars. Cold-induced seed coat discoloration (CD), a commercially serious deterioration of seed appearance, is caused by an inhibition of this PTGS upon exposure to low temperatures. In the highly CD-tolerant cultivar Toyoharuka, the GmIRCHS structure differs from that of other cultivars. The aim of this study was to determine whether the variation of GmIRCHS structure among cultivars is related to variations in CD tolerance. Using two sets of recombinant inbred lines between Toyoharuka and CD-susceptible cultivars, we compared the GmIRCHS genotype and CD tolerance phenotype during low temperature treatment. The GmIRCHS genotype was related to the phenotype of CD tolerance. A QTL analysis around GmIRCHS showed that GmIRCHS itself or a region located very close to it was responsible for CD tolerance. The variation in GmIRCHS can serve as a useful DNA marker for marker-assisted selection for breeding CD tolerance. In addition, QTL analysis of the whole genome revealed a minor QTL that also affected CD tolerance.
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