Evidence map›Paper›PMID 20981366›Full record

ArticleOrganic & biomolecular chemistry2011

Nucleotidylation of unsaturated carbasugar in validamycin biosynthesis.

Jongtae Yang, Hui Xu, Yirong Zhang, Linquan Bai, Zixin Deng, Taifo Mahmud

Open access · greenAbstract read
In one paragraph

Article in Organic & biomolecular chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

  1. NonglycosidicSynthetic and systems biotechnology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jongtae YangDepartment of Pharmaceutical Sciences, Oregon State University, Corvallis, OR 97331, USA.
Hui Xu
Yirong Zhang
Linquan Bai
Zixin Deng
Taifo Mahmud
Oregon State University · USShanghai Jiao Tong University · CN

Funding

BIOSYNTHESIS APPROACH TO NOVEL BIOACTIVE AMINOCYCLITOLSR01AI061528 · NIAID · OREGON STATE UNIVERSITY · PI MAHMUD, TAIFO · 2004 to 2010
$1.5M
NIAID NIH HHS R01 AI061528NIAID NIH HHS R01AI061528
6 · The paper itself

Abstract

Validamycin A is a member of microbial-derived C(7)N-aminocyclitol family of natural products that is widely used as crop protectant and the precursor of the antidiabetic drug voglibose. Its biosynthetic gene clusters have been identified in several Streptomyces hygroscopicus strains, and a number of genes within the clusters have been functionally analyzed. Of these genes, valB, which encodes a sugar nucleotidyltransferase, was found through inactivation study to be essential for validamycin biosynthesis, but its role was unclear. To characterize the role of ValB in validamycin biosynthesis, four carbasugar phosphate analogues were synthesized and tested as substrate for ValB. The results showed that ValB efficiently catalyzes the conversion of valienol 1-phosphate to its nucleotidyl diphosphate derivatives, whereas other unsaturated carbasugar phosphates were found to be not the preferred substrate. ValB requires Mg(2+), Mn(2+), or Co(2+) for its optimal activity and uses the purine-based nucleotidyltriphosphates (ATP and GTP) more efficiently than the pyrimidine-based NTPs (CTP, dTTP, and UTP) as nucleotidyl donor. ValB represents the first member of unsaturated carbasugar nucleotidyltransferases involved in natural products biosynthesis. Its characterization not only expands our understanding of aminocyclitol-derived natural products biosynthesis, but may also facilitate the development of new tools for chemoenzymatic synthesis of carbohydrate mimetics.

Indexed as

CarbasugarsInositolMolecular StructureMultigene FamilyMutationNucleotidesStreptomycesCarbasugarsInositolNucleotidesvalidamycins

Identifiers

PMID20981366
PMCPMC3124559
OpenAlexW2008947610

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.