Evidence map›Paper›PMID 20980813›Full record

ArticleAutophagy2011

Antibacterial autophagy occurs at PI(3)P-enriched domains of the endoplasmic reticulum and requires Rab1 GTPase.

Ju Huang, Cheryl L Birmingham, Shahab Shahnazari, Jessica Shiu, Yiyu T Zheng, Adam C Smith, Kenneth G Campellone, Won Do Heo, Samantha Gruenheid, Tobias Meyer and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Autophagy, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed, 2 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 2 syntheses or guidelines pooled it, 109 citations in OpenAlex.

  1. Guideline
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  11. Journal of immunology research · 2022
    Article
  12. Review
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  18. Frontiers in immunology · 2021
    Article
  19. Review
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11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 4 countries.

Ju HuangCell Biology Program, Hospital for Sick Children, Toronto, ON, Canada.
Cheryl L Birmingham
Shahab Shahnazari
Jessica Shiu
Yiyu T Zheng
Adam C Smith
Kenneth G Campellone
Won Do Heo
Samantha Gruenheid
Tobias Meyer
Matthew D Welch
Nicholas T Ktistakis
Peter Kijun Kim
Daniel J Klionsky
John H Brumell
University of Toronto · CAUniversity of California, Berkeley · USBabraham Institute · GBHospital for Sick Children · CAKorea Advanced Institute of Science and Technology · KRMcGill University · CAStanford University · US

Funding

ALTERNATIVE VACUOLAR TARGETING MECHANISMS IN YEASTR01GM053396 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KLIONSKY, DANIEL J. · 1995 to 2018
$12.1M
FUNCTION &REGULATION OF THE HUMAN ARP2/3 COMPLEXR01GM059609 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI WELCH, MATTHEW D · 1999 to 2017
$5.1M
Manipulation of the actin cytoskeleton by spotted fever group RickettsiaR01AI074760 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI WELCH, MATTHEW D · 2007 to 2011
$1.8M
Biotechnology and Biological Sciences Research Council BBS/E/B/00001221CIHRNIAID NIH HHS R01 AI074760NIGMS NIH HHS R01 GM053396NIGMS NIH HHS R01 GM059609
6 · The paper itself

Abstract

Autophagy mediates the degradation of cytoplasmic components in eukaryotic cells and plays a key role in immunity. The mechanism of autophagosome formation is not clear. Here we examined two potential membrane sources for antibacterial autophagy: the ER and mitochondria. DFCP1, a marker of specialized ER domains known as 'omegasomes,' associated with Salmonella-containing autophagosomes via its PtdIns(3)P and ER-binding domains, while a mitochondrial marker (cytochrome b5-GFP) did not. Rab1 also localized to autophagosomes, and its activity was required for autophagosome formation, clearance of protein aggregates and peroxisomes, and autophagy of Salmonella. Overexpression of Rab1 enhanced antibacterial autophagy. The role of Rab1 in antibacterial autophagy was independent of its role in ER-to-Golgi transport. Our data suggest that antibacterial autophagy occurs at omegasomes and reveal that the Rab1 GTPase plays a crucial role in mammalian autophagy.

Indexed as

AutophagyAnimalsCarrier ProteinsEndoplasmic ReticulumGolgi ApparatusHeLa CellsHumansIntracellular MembranesMicePeroxisomesPhagosomesPhosphatidylinositol PhosphatesProtein Structure, QuaternaryProtein Transportrab1 GTP-Binding ProteinsSalmonella typhimuriumCarrier Proteinsphosphatidylinositol 3-phosphatePhosphatidylinositol Phosphatesrab1 GTP-Binding ProteinsSirolimusUbiquitinated ProteinsZFYVE1 protein, human

Identifiers

PMID20980813
PMCPMC3039730
OpenAlexW1970428129

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.