Evidence map›Paper›PMID 20980524›Full record

ArticleJournal of virology2011

Association of TRIM22 with the type 1 interferon response and viral control during primary HIV-1 infection.

Ravesh Singh, Gaurav Gaiha, Lise Werner, Kevin McKim, Koleka Mlisana, Jeremy Luban, Bruce D Walker, Salim S Abdool Karim, Abraham L Brass, Thumbi Ndung'u and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it, 85 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Intracellular Antiviral Immunity.Advances in virus research · 2018
    Review
  15. Review
  16. Mechanisms of HIV-1 Control.Current HIV/AIDS reports · 2017
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Ravesh SinghDoris Duke Medical Research Institute, University of KwaZulu-Natal, Private Bag X7, Congella, Durban 4001, South Africa.
Gaurav Gaiha
Lise Werner
Kevin McKim
Koleka Mlisana
Jeremy Luban
Bruce D Walker
Salim S Abdool Karim
Abraham L Brass
Thumbi Ndung'u
CAPRISA Acute Infection Study Team
Ragon Institute of MGH, MIT and Harvard · USUniversity of KwaZulu-Natal · ZACentre for the AIDS Programme of Research in South Africa · ZAUniversity of Geneva · CH

Funding

The Viral Set Point in HIV-1 Subtype C InfectionU19AI051794 · NIAID · UNIVERSITY OF KWAZULU-NATAL · PI ABDOOL KARIM, SALIM S · 2002 to 2007
$22.5M
Cyclophilin A Function in the Immune SystemR01AI059159 · NIAID · UNIVERSITY OF GENEVA · PI LUBAN, JEREMY · 2006 to 2011
$1.4M
NIAID NIH HHS R01 AI059159NIAID NIH HHS R01AI059159NIAID NIH HHS U19 AI051794NIAID NIH HHS U19 AI 51794
6 · The paper itself

Abstract

Type 1 interferons (IFNs) induce the expression of the tripartite interaction motif (TRIM) family of E3 ligases, but the contribution of these antiviral factors to HIV pathogenesis is not completely understood. We hypothesized that the increased expression of select type 1 IFN and TRIM isoforms is associated with a significantly lower likelihood of HIV-1 acquisition and viral control during primary HIV-1 infection. We measured IFN-α, IFN-β, myxovirus resistance protein A (MxA), human TRIM5α (huTRIM5α), and TRIM22 mRNA levels in peripheral blood mononuclear cells (PBMCs) of high-risk, HIV-1-uninfected participants and HIV-1-positive study participants. Samples were available for 32 uninfected subjects and 28 infected persons, all within 1 year of infection. HIV-1-positive participants had higher levels of IFN-β (P = 0.0005), MxA (P = 0.007), and TRIM22 (P = 0.01) and lower levels of huTRIM5α (P < 0.001) than did HIV-1-negative participants. TRIM22 but not huTRIM5α correlated positively with type 1 IFN (IFN-α, IFN-β, and MxA) (all P < 0.0001). In a multivariate model, increased MxA expression showed a significant positive association with viral load (P = 0.0418). Furthermore, TRIM22 but not huTRIM5α, IFN-α, IFN-β, or MxA showed a negative correlation with plasma viral load (P = 0.0307) and a positive correlation with CD4(+) T-cell counts (P = 0.0281). In vitro studies revealed that HIV infection induced TRIM22 expression in PBMCs obtained from HIV-negative donors. Stable TRIM22 knockdown resulted in increased HIV-1 particle release and replication in Jurkat reporter cells. Collectively, these data suggest concordance between type 1 IFN and TRIM22 but not huTRIM5α expression in PBMCs and that TRIM22 likely acts as an antiviral effector in vivo.

Indexed as

Antiviral AgentsCell LineCohort StudiesFemaleGTP-Binding ProteinsHIV-1HIV InfectionsHumansInterferon-alphaInterferon-betaJurkat CellsLeukocytes, MononuclearLymphocyte ActivationMinor Histocompatibility AntigensMyxovirus Resistance ProteinsRepressor ProteinsAntiviral AgentsGTP-Binding ProteinsInterferon-alphaInterferon-betaMinor Histocompatibility AntigensMX1 protein, humanMyxovirus Resistance ProteinsRepressor ProteinsTRIM22 protein, humanTripartite Motif Proteins

Identifiers

PMID20980524
PMCPMC3014203
OpenAlexW2153784440

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.