Evidence map›Paper›PMID 20978080›Full record

ArticleDevelopment (Cambridge, England)2010

Hedgehog targets in the Drosophila embryo and the mechanisms that generate tissue-specific outputs of Hedgehog signaling.

Brian Biehs, Katerina Kechris, Songmei Liu, Thomas B Kornberg

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  6. TheProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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  10. eLife · 2020
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  11. Review
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  18. Transcriptional regulation of graded Hedgehog signaling.Seminars in cell & developmental biology · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Brian BiehsCardiovascular Research Institute and Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94143-2711, USA.
Katerina Kechris
Songmei Liu
Thomas B Kornberg
University of California, San Francisco · US

Funding

HEDGEHOG SIGNALING IN DEVELOPMENT AND DISEASER01GM077407 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KORNBERG, THOMAS B. · 2006 to 2009
$1.1M
Genomic regulatory sequence analysis for alcohol-related phenotypesK01AA016922 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI KECHRIS-MAYS, KATHERINA · 2007 to 2011
$737k
NIAAA NIH HHS AA016922NIAAA NIH HHS K01 AA016922NIGMS NIH HHS GM77407NIGMS NIH HHS R01 GM077407
6 · The paper itself

Abstract

Paracrine Hedgehog (Hh) signaling regulates growth and patterning in many Drosophila organs. We mapped chromatin binding sites for Cubitus interruptus (Ci), the transcription factor that mediates outputs of Hh signal transduction, and we analyzed transcription profiles of control and mutant embryos to identify genes that are regulated by Hh. Putative targets that we identified included several Hh pathway components, mostly previously identified targets, and many targets that are novel. Every Hh target we analyzed that is not a pathway component appeared to be regulated by Hh in a tissue-specific manner; analysis of expression patterns of pathway components and target genes provided evidence of autocrine Hh signaling in the optic primordium of the embryo. We present evidence that tissue specificity of Hh targets depends on transcription factors that are Hh-independent, suggesting that `pre-patterns' of transcription factors partner with Ci to make Hh-dependent gene expression position specific.

Indexed as

Signal TransductionAnimalsDNA-Binding ProteinsDrosophilaDrosophila ProteinsEmbryo, NonmammalianGene Expression Regulation, DevelopmentalHedgehog ProteinsOrgan SpecificityTranscription Factorsci protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsHedgehog Proteinshh protein, DrosophilaTranscription Factors

Identifiers

PMID20978080
PMCPMC3049281
OpenAlexW2150272806

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.