ArticlePloS one2010
An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research.
Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
28 citing papers in PubMed.
- Thriving or Withering? Plant Molecular Cytogenetics in the First Quarter of the 21st Century.International journal of molecular sciences · 2025Review
- Efficient construction of a linkage map and haplotypes for Mentha suaveolens using sequence capture.G3 (Bethesda, Md.) · 2021Article
- A Dual-Color Tyr-FISH Method for Visualizing Genes/Markers on Plant Chromosomes to Create Integrated Genetic and Cytogenetic Maps.International journal of molecular sciences · 2021Article
- Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors.Nature communications · 2020Article
- Comparatively Barcoded Chromosomes ofInternational journal of molecular sciences · 2019Article
- DetectingInternational journal of molecular sciences · 2019Article
- Dissecting the chromosomal composition of mutagen-induced micronuclei in Brachypodium distachyon using multicolour FISH.Annals of botany · 2018Article
- Chromosome identification and reconstruction of evolutionary rearrangements in Brachypodium distachyon, B. stacei and B. hybridum.Annals of botany · 2018Article
- Review
- Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana.The Plant journal : for cell and molecular biology · 2016Article
- The arrangement of Brachypodium distachyon chromosomes in interphase nuclei.Journal of experimental botany · 2016Article
- Chromosome Territory Modeller and Viewer.PloS one · 2016Article
- Cytomolecular Analysis of Ribosomal DNA Evolution in a Natural AllotetraploidFrontiers in plant science · 2016Article
- Spatial distribution of centromeres and telomeres at interphase varies among Brachypodium species.Journal of experimental botany · 2015Article
- Pushing the boundaries of resistance: insights from Brachypodium-rust interactions.Frontiers in plant science · 2015Review
- Reconstructing the Evolution of Brachypodium Genomes Using Comparative Chromosome Painting.PloS one · 2014Article
- Insight into the karyotype evolution of brachypodium species using comparative chromosome barcoding.PloS one · 2014Article
- Article
- A physical map of the short arm of wheat chromosome 1A.PloS one · 2013Article
- BAC-pool sequencing and analysis of large segments of A12 and D12 homoeologous chromosomes in upland cotton.PloS one · 2013Article
Corrections and comments
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Authors and funding
17 authors.
Funding
Abstract
The pooid subfamily of grasses includes some of the most important crop, forage and turf species, such as wheat, barley and Lolium. Developing genomic resources, such as whole-genome physical maps, for analysing the large and complex genomes of these crops and for facilitating biological research in grasses is an important goal in plant biology. We describe a bacterial artificial chromosome (BAC)-based physical map of the wild pooid grass Brachypodium distachyon and integrate this with whole genome shotgun sequence (WGS) assemblies using BAC end sequences (BES). The resulting physical map contains 26 contigs spanning the 272 Mb genome. BES from the physical map were also used to integrate a genetic map. This provides an independent validation and confirmation of the published WGS assembly. Mapped BACs were used in Fluorescence In Situ Hybridisation (FISH) experiments to align the integrated physical map and sequence assemblies to chromosomes with high resolution. The physical, genetic and cytogenetic maps, integrated with whole genome shotgun sequence assemblies, enhance the accuracy and durability of this important genome sequence and will directly facilitate gene isolation.
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Registered trials
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