Evidence map›Paper›PMID 20976105›Full record

ArticlePloS one2010

Silencing mediated by the Schizosaccharomyces pombe HIRA complex is dependent upon the Hpc2-like protein, Hip4.

Holly E Anderson, Alexander Kagansky, Josephine Wardle, Juri Rappsilber, Robin C Allshire, Simon K Whitehall

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 30 citations in OpenAlex.

  1. Cytoophidia Influence Cell Cycle and Size inInternational journal of molecular sciences · 2024
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  2. The longevity and reversibility of quiescence inCell cycle (Georgetown, Tex.) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Holly E AndersonInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle, United Kingdom.
Alexander Kagansky
Josephine Wardle
Juri Rappsilber
Robin C Allshire
Simon K Whitehall
Newcastle University · GBUniversity of Edinburgh · GBWellcome Centre for Cell Biology · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E014445/1Medical Research Council G0301153Wellcome Trust 065061/ZWellcome Trust 084229Wellcome Trust 084229/Z/07/Z
6 · The paper itself

Abstract

backgroundHIRA (or Hir) proteins are conserved histone chaperones that function in multi-subunit complexes to mediate replication-independent nucleosome assembly. We have previously demonstrated that the Schizosaccharomyces pombe HIRA proteins, Hip1 and Slm9, form a complex with a TPR repeat protein called Hip3. Here we have identified a new subunit of this complex. METHODOLOGY/PRINCIPAL

findingsTo identify proteins that interact with the HIRA complex, rapid affinity purifications of Slm9 were performed. Multiple components of the chaperonin containing TCP-1 complex (CCT) and the 19S subunit of the proteasome reproducibly co-purified with Slm9, suggesting that HIRA interacts with these complexes. Slm9 was also found to interact with a previously uncharacterised protein (SPBC947.08c), that we called Hip4. Hip4 contains a HRD domain which is a characteristic of the budding yeast and human HIRA/Hir-binding proteins, Hpc2 and UBN1. Co-precipitation experiments revealed that Hip4 is stably associated with all of the other components of the HIRA complex and deletion of hip4(+) resulted in the characteristic phenotypes of cells lacking HIRA function, such as temperature sensitivity, an elongated cell morphology and hypersensitivity to the spindle poison, thiabendazole. Moreover, loss of Hip4 function alleviated the heterochromatic silencing of reporter genes located in the mating type locus and centromeres and was associated with increased levels of non-coding transcripts derived from centromeric repeat sequences. Hip4 was also found to be required for the distinct form of silencing that controls the expression of Tf2 LTR retrotransposons. CONCLUSIONS/SIGNIFICANCE: Overall, these results indicate that Hip4 is an integral component of the HIRA complex that is required for transcriptional silencing at multiple loci.

Indexed as

Gene SilencingAmino Acid SequenceBase SequenceChromatography, LiquidDNA PrimersMolecular Sequence DataOpen Reading FramesReverse Transcriptase Polymerase Chain ReactionSchizosaccharomycesSchizosaccharomyces pombe ProteinsSequence Homology, Amino AcidTandem Mass SpectrometryTranscription FactorsDNA Primership1 protein, S pombeSchizosaccharomyces pombe ProteinsTranscription Factors

Identifiers

PMID20976105
PMCPMC2956695
OpenAlexW2043534651

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.