Evidence map›Paper›PMID 20974853›Full record

ArticleThe Journal of biological chemistry2011

Structural modeling and electron paramagnetic resonance spectroscopy of the human Na+/H+ exchanger isoform 1, NHE1.

Eva B Nygaard, Jens O Lagerstedt, Gabriel Bjerre, Biao Shi, Madhu Budamagunta, Kristian A Poulsen, Stine Meinild, Robert R Rigor, John C Voss, Peter M Cala and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
7.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
  2. Review
  3. The Remaining Conundrum of the Role of the NaReviews in cardiovascular medicine · 2022
    Review
  4. Article
  5. Article
  6. Role of Genetic Mutations of the NaMolecular and cellular biochemistry · 2021
    Review
  7. Article
  8. Acidic residues of extracellular loop 3 of the NaMolecular and cellular biochemistry · 2020
    Article
  9. Interplay between hydrophobicity and the positive-inside rule in determining membrane-protein topology.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Article
  11. Article
  12. Na+-H+ exchanger-1 (NHE1) regulation in kidney proximal tubule.Cellular and molecular life sciences : CMLS · 2015
    Review
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Eva B NygaardDepartment of Biology, University of Copenhagen, DK-2100 Copenhagen, Denmark.
Jens O Lagerstedt
Gabriel Bjerre
Biao Shi
Madhu Budamagunta
Kristian A Poulsen
Stine Meinild
Robert R Rigor
John C Voss
Peter M Cala
Stine F Pedersen
University of Copenhagen · DKUniversity of California, Davis · USLund University · SE

Funding

FUNDAMENTAL AND FUNCTIONAL ASPECTS OF NA/H EXCHANGER37HL021179 · NHLBI · UNIVERSITY OF CALIFORNIA DAVIS · PI CALA, PETER MICHAEL · 1995 to 2004
$2.7M
VOLUME REGULATION: THE NATURE OF THE ALKALI METAL/H FLUXR01HL021179 · NHLBI · UNIVERSITY OF CALIFORNIA DAVIS · PI CALA, PETER MICHAEL · 1985 to 1994
–
NHLBI NIH HHS HL-21179NHLBI NIH HHS R37 HL021179
6 · The paper itself

Abstract

We previously presented evidence that transmembrane domain (TM) IV and TM X-XI are important for inhibitor binding and ion transport by the human Na(+)/H(+) exchanger, hNHE1 (Pedersen, S. F., King, S. A., Nygaard, E. B., Rigor, R. R., and Cala, P. M. (2007) J. Biol. Chem. 282, 19716-19727). Here, we present a structural model of the transmembrane part of hNHE1 that further supports this conclusion. The hNHE1 model was based on the crystal structure of the Escherichia coli Na(+)/H(+) antiporter, NhaA, and previous cysteine scanning accessibility studies of hNHE1 and was validated by EPR spectroscopy of spin labels in TM IV and TM XI, as well as by functional analysis of hNHE1 mutants. Removal of all endogenous cysteines in hNHE1, introduction of the mutations A173C (TM IV) and/or I461C (TM XI), and expression of the constructs in mammalian cells resulted in functional hNHE1 proteins. The distance between these spin labels was ∼15 A, confirming that TM IV and TM XI are in close proximity. This distance was decreased both at pH 5.1 and in the presence of the NHE1 inhibitor cariporide. A similar TM IV·TM XI distance and a similar change upon a pH shift were found for the cariporide-insensitive Pleuronectes americanus (pa) NHE1; however, in paNHE1, cariporide had no effect on TM IV·TM XI distance. The central role of the TM IV·TM XI arrangement was confirmed by the partial loss of function upon mutation of Arg(425), which the model predicts stabilizes this arrangement. The data are consistent with a role for TM IV and TM XI rearrangements coincident with ion translocation and inhibitor binding by hNHE1.

Indexed as

Models, MolecularAmino Acid SequenceAnimalsArginineCation Transport ProteinsCell LineCell MembraneCricetinaeCricetulusElectron Spin Resonance SpectroscopyFlounderHumansMolecular Sequence DataMutagenesis, Site-DirectedMutationProtein Structure, TertiaryArginineCation Transport ProteinsSLC9A1 protein, humanSodium-Hydrogen Exchanger 1Sodium-Hydrogen Exchangers

Identifiers

PMID20974853
PMCPMC3013023
OpenAlexW2115149901

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.