Evidence map›Paper›PMID 20974151›Full record

ArticleJournal of molecular biology2011

Crystal structures of penicillin-binding protein 3 from Pseudomonas aeruginosa: comparison of native and antibiotic-bound forms.

Sarah Sainsbury, Louise Bird, Vincenzo Rao, Sharon M Shepherd, David I Stuart, William N Hunter, Raymond J Owens, Jingshan Ren

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Journal of molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
1.6field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 94 citations in OpenAlex.

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  5. Specific variants inMicrobiology spectrum · 2025
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  10. β-lactam Resistance inPathogens (Basel, Switzerland) · 2021
    Review
  11. Article
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  14. Article
  15. Article
  16. Article
  17. Recognition of the β-lactam carboxylate triggers acylation ofThe Journal of biological chemistry · 2019
    Article
  18. Article
  19. Time-Resolved Macromolecular Crystallography at Pulsed X-ray Sources.International journal of molecular sciences · 2019
    Review
  20. Mode of Action of the Monobactam LYS228 and Mechanisms DecreasingAntimicrobial agents and chemotherapy · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Sarah SainsburyHenry Wellcome Building for Genomic Medicine, University of Oxford, Oxford OX3 7BN, UK.
Louise Bird
Vincenzo Rao
Sharon M Shepherd
David I Stuart
William N Hunter
Raymond J Owens
Jingshan Ren
Centre for Human Genetics · GBUniversity of Dundee · GBRutherford Appleton Laboratory · GB

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council G0500365Medical Research Council G0701506Medical Research Council G1000099Medical Research Council G1100525Medical Research Council G19/3Wellcome Trust 075491/Z/04Wellcome Trust 082596Wellcome Trust 083481
6 · The paper itself

Abstract

We report the first crystal structures of a penicillin-binding protein (PBP), PBP3, from Pseudomonas aeruginosa in native form and covalently linked to two important β-lactam antibiotics, carbenicillin and ceftazidime. Overall, the structures of apo and acyl complexes are very similar; however, variations in the orientation of the amino-terminal membrane-proximal domain relative to that of the carboxy-terminal transpeptidase domain indicate interdomain flexibility. Binding of either carbenicillin or ceftazidime to purified PBP3 increases the thermostability of the enzyme significantly and is associated with local conformational changes, which lead to a narrowing of the substrate-binding cleft. The orientations of the two β-lactams in the active site and the key interactions formed between the ligands and PBP3 are similar despite differences in the two drugs, indicating a degree of flexibility in the binding site. The conserved binding mode of β-lactam-based inhibitors appears to extend to other PBPs, as suggested by a comparison of the PBP3/ceftazidime complex and the Escherichia coli PBP1b/ceftoxamine complex. Since P. aeruginosa is an important human pathogen, the structural data reveal the mode of action of the frontline antibiotic ceftazidime at the molecular level. Improved drugs to combat infections by P. aeruginosa and related Gram-negative bacteria are sought and our study provides templates to assist that process and allows us to discuss new ways of inhibiting PBPs.

Indexed as

Anti-Bacterial AgentsCarbenicillinCatalytic DomainCeftazidimeCrystallography, X-RayEnzyme InhibitorsModels, MolecularPenicillin-Binding ProteinsProtein BindingProtein StabilityProtein Structure, TertiaryPseudomonas aeruginosaTemperatureAnti-Bacterial AgentsCarbenicillinCeftazidimeEnzyme InhibitorsPenicillin-Binding Proteins

Identifiers

PMID20974151
PMCPMC3025346
OpenAlexW2086641163

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.