Evidence map›Paper›PMID 20972438›Full record

ArticleNature genetics2010

A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.

Nathaniel Rothman, Montserrat Garcia-Closas, Nilanjan Chatterjee, Nuria Malats, Xifeng Wu, Jonine D Figueroa, Francisco X Real, David Van Den Berg, Giuseppe Matullo, Dalsu Baris and 100 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 267 papers, 22 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
267citing papers in PubMed, 22 pooled it
48.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

267 citing papers in PubMed, 22 syntheses or guidelines pooled it, 486 citations in OpenAlex.

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  6. TERT rs10069690 polymorphism and cancers risk: A meta-analysis.Molecular genetics & genomic medicine · 2019
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207 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

110 authors at 20 institutions in 14 countries.

Nathaniel RothmanDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.
Montserrat Garcia-Closas
Nilanjan Chatterjee
Nuria Malats
Xifeng Wu
Jonine D Figueroa
Francisco X Real
David Van Den Berg
Giuseppe Matullo
Dalsu Baris
Michael Thun
Lambertus A Kiemeney
Paolo Vineis
Immaculata De Vivo
Demetrius Albanes
Mark P Purdue
Thorunn Rafnar
Michelle A T Hildebrandt
Anne E Kiltie
Olivier Cussenot
Klaus Golka
Rajiv Kumar
Jack A Taylor
Jose I Mayordomo
Kevin B Jacobs
Manolis Kogevinas
Amy Hutchinson
Zhaoming Wang
Yi-Ping Fu
Ludmila Prokunina-Olsson
Laurie Burdett
Meredith Yeager
William Wheeler
Adonina Tardón
Consol Serra
Alfredo Carrato
Reina García-Closas
Josep Lloreta
Alison Johnson
Molly Schwenn
Margaret R Karagas
Alan Schned
Gerald Andriole
Robert Grubb
Amanda Black
Eric J Jacobs
W Ryan Diver
Susan M Gapstur
Stephanie J Weinstein
Jarmo Virtamo
Victoria K Cortessis
Manuela Gago-Dominguez
Malcolm C Pike
Mariana C Stern
Jian-Min Yuan
David J Hunter
Monica McGrath
Colin P Dinney
Bogdan Czerniak
Meng Chen
Hushan Yang
Sita H Vermeulen
Katja K Aben
J Alfred Witjes
Remco R Makkinje
Patrick Sulem
Soren Besenbacher
Kari Stefansson
Elio Riboli
Paul Brennan
Salvatore Panico
Carmen Navarro
Naomi E Allen
H Bas Bueno-de-Mesquita
Dimitrios Trichopoulos
Neil Caporaso
Maria Teresa Landi
Federico Canzian
Borje Ljungberg
Anne Tjonneland
Francoise Clavel-Chapelon
David T Bishop
Mark T W Teo
Margaret A Knowles
Simonetta Guarrera
Silvia Polidoro
Fulvio Ricceri
Carlotta Sacerdote
Alessandra Allione
Geraldine Cancel-Tassin
Silvia Selinski
Jan G Hengstler
Holger Dietrich
Tony Fletcher
Peter Rudnai
Eugen Gurzau
Kvetoslava Koppova
Sophia C E Bolick
Ashley Godfrey
Zongli Xu
José I Sanz-Velez
María D García-Prats
Manuel Sanchez
Gabriel Valdivia
Stefano Porru
Simone Benhamou
Robert N Hoover
Joseph F Fraumeni
Debra T Silverman
Stephen J Chanock
Division of Cancer Epidemiology and GeneticsNational Cancer Institute · USThe University of Texas MD Anderson Cancer Center · USAmerican Cancer Society · USNational Institute of Environmental Health Sciences · USUniversity of Southern California · USdeCODE Genetics (Iceland) · ISItalian institute for Genomic Medicine · ITRadboud University Nijmegen · NLUniversidad de Zaragoza · ESUniversity of Turin · ITCentro de Investigación Biomédica en Red de Epidemiología y Salud Pública · ESDartmouth College · USGerman Cancer Research Center · DEHarvard University · USHospital General San Jorge · ESImperial College London · GBPompeu Fabra University · ESRadboud University Medical Center · NLScience Applications International Corporation (United States) · US

Funding

Laboratory of Translational GenomicsZIACP010201 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI PROKUNINA-OLSSON, LIUDMILA · 2010 to 2025
$91.2M
Genetic Susceptibility And The Environment In Cancer RiskZIAES049033 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI TAYLOR, JACK A · 2009 to 2022
$7.7M
Cancer Research UK 10589Cancer Research UK 12933CCR NIH HHS HHSN261200800001CIntramural NIH HHS Z99 CA999999NCI NIH HHS HHSN261200800001E
6 · The paper itself

Abstract

We conducted a multi-stage, genome-wide association study of bladder cancer with a primary scan of 591,637 SNPs in 3,532 affected individuals (cases) and 5,120 controls of European descent from five studies followed by a replication strategy, which included 8,382 cases and 48,275 controls from 16 studies. In a combined analysis, we identified three new regions associated with bladder cancer on chromosomes 22q13.1, 19q12 and 2q37.1: rs1014971, (P = 8 × 10⁻¹²) maps to a non-genic region of chromosome 22q13.1, rs8102137 (P = 2 × 10⁻¹¹) on 19q12 maps to CCNE1 and rs11892031 (P = 1 × 10⁻⁷) maps to the UGT1A cluster on 2q37.1. We confirmed four previously identified genome-wide associations on chromosomes 3q28, 4p16.3, 8q24.21 and 8q24.3, validated previous candidate associations for the GSTM1 deletion (P = 4 × 10⁻¹¹) and a tag SNP for NAT2 acetylation status (P = 4 × 10⁻¹¹), and found interactions with smoking in both regions. Our findings on common variants associated with bladder cancer risk should provide new insights into the mechanisms of carcinogenesis.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyPolymorphism, Single NucleotideArylamine N-AcetyltransferaseChromosome MappingChromosomes, Human, Pair 18Chromosomes, Human, Pair 2Chromosomes, Human, Pair 22EuropeFamilyFemaleHumansIncidenceMaleNeoplasm StagingRisk AssessmentArylamine N-AcetyltransferaseNAT2 protein, human

Identifiers

PMID20972438
PMCPMC3049891
OpenAlexW2039310245

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.