Evidence map›Paper›PMID 20972219›Full record

ArticleNucleic acids research2011

Co-transcriptional RNA cleavage provides a failsafe termination mechanism for yeast RNA polymerase I.

Priscilla Braglia, Junya Kawauchi, Nick J Proudfoot

Abstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. Article
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  5. Article
  6. Article
  7. Review
  8. Review
  9. Functional architecture of the Reb1-Ter complex of Schizosaccharomyces pombe.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Transcription: base J blocks the way.Current biology : CB · 2012
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Priscilla BragliaSir William Dunn School of Pathology, University of Oxford, Oxford, OX1 3RE, UK.
Junya Kawauchi
Nick J Proudfoot

Funding

Wellcome Trust
6 · The paper itself

Abstract

Ribosomal RNA, transcribed by RNA polymerase (Pol) I, accounts for most cellular RNA. Since Pol I transcribes rDNA repeats with high processivity and polymerase density, transcription termination is a critical process. Early in vitro studies proposed polymerase pausing by Reb1 and transcript release at the T-rich element T1 determined transcription termination. However recent in vivo studies revealed a 'torpedo' mechanism for Pol I termination: co-transcriptional RNA cleavage by Rnt1 provides an entry site for the 5'-3' exonuclease Rat1 that degrades Pol I-associated transcripts destabilizing the transcription complex. Significantly Rnt1 inactivation in vivo reveals a second co-transcriptional RNA cleavage event at T1 which provides Pol I with an alternative termination pathway. An intact Reb1-binding site is also required for Rnt1-independent termination. Consequently our results reconcile the original Reb1-mediated termination pathway as part of a failsafe mechanism for this essential transcription process.

Indexed as

Transcription, GeneticDNA-Binding ProteinsDNA HelicasesDNA, RibosomalExoribonucleasesGene DeletionMutagenesisRibonuclease IIIRNA HelicasesRNA Polymerase IRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTerminator Regions, GeneticThymineTranscription FactorsDNA-Binding ProteinsDNA HelicasesDNA, RibosomalExoribonucleasesRAT1 protein, S cerevisiaeREB1 protein, S cerevisiaeRibonuclease IIIRNA HelicasesRNA Polymerase IRNA, RibosomalRNA, ribosomal, 25SRNT1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSEN1 protein, S cerevisiaeThymineTranscription Factors

Identifiers

PMID20972219
PMCPMC3045592

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.