Evidence map›Paper›PMID 20971913›Full record

ArticleJournal of bacteriology2011

Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96.

Dmitri V Mavrodi, Anna Joe, Olga V Mavrodi, Karl A Hassan, David M Weller, Ian T Paulsen, Joyce E Loper, James R Alfano, Linda S Thomashow

Abstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Article
  3. Wild rice-associatedmSystems · 2025
    Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Exploring the Pathogenicity ofPlant disease · 2020
    Article
  15. Review
  16. Genetic factors involved in rhizosphere colonization by phytobeneficialComputational and structural biotechnology journal · 2020
    Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Dmitri V MavrodiDepartment of Plant Pathology, Washington State University, Pullman, Washington 99164-6430, USA. thomashow@wsu.edu
Anna Joe
Olga V Mavrodi
Karl A Hassan
David M Weller
Ian T Paulsen
Joyce E Loper
James R Alfano
Linda S Thomashow

Funding

Suppression of innate immunity by an ADP-ribosyltransferase type III effectorR01AI069146 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI ALFANO, JAMES ROBERT · 2008 to 2012
$1.8M
NIAID NIH HHS 1R01AI069146-01A2NIAID NIH HHS R01 AI069146
6 · The paper itself

Abstract

Pseudomonas fluorescens Q8r1-96 represents a group of rhizosphere strains responsible for the suppressiveness of agricultural soils to take-all disease of wheat. It produces the antibiotic 2,4-diacetylphloroglucinol and aggressively colonizes the roots of cereal crops. In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae. We also screened a collection of 30 closely related P. fluorescens strains and detected the T3SS genes in all but one of them. The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and injected into plant cells by both P. syringae and Q8r1-96 T3SSs. The Q8r1-96 T3SS was expressed in the rhizosphere, but mutants lacking a functional T3SS were not altered in their rhizosphere competence. The Q8r1-96 type III effectors RopAA, RopB, and RopM were capable of suppressing the hypersensitive response and production of reactive oxygen species, two plant immune responses.

Indexed as

Bacterial ProteinsChromosomes, BacterialGene Expression Regulation, BacterialMutationPhosphotransferases (Phosphate Group Acceptor)PhylogenyPlant DiseasesPlant RootsPseudomonas fluorescensSignal TransductionSoil MicrobiologyTriticumBacterial ProteinsPhosphotransferases (Phosphate Group Acceptor)polyphosphate AMP phosphotransferase

Identifiers

PMID20971913
PMCPMC3019950

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.