Evidence map›Paper›PMID 20971872›Full record

ArticleApplied and environmental microbiology2010

Effect of sulfadiazine-contaminated pig manure on the abundances of genes and transcripts involved in nitrogen transformation in the root-rhizosphere complexes of maize and clover.

Julien Ollivier, Kristina Kleineidam, Rüdiger Reichel, Sören Thiele-Bruhn, Anja Kotzerke, Reimo Kindler, Berndt-Michael Wilke, Michael Schloter

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 65 citations in OpenAlex.

  1. Oxytetracycline Degrading Potential ofEvidence-based complementary and alternative medicine : eCAM · 2022
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Sulfadiazine uptake and effects in common hazel (Corylus avellana L.).Environmental science and pollution research international · 2015
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Julien OllivierTechnical University Munich, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany. julien.ollivier@helmholtz-muenchen.de
Kristina Kleineidam
Rüdiger Reichel
Sören Thiele-Bruhn
Anja Kotzerke
Reimo Kindler
Berndt-Michael Wilke
Michael Schloter
Helmholtz Zentrum München · DETechnische Universität Berlin · DEUniversität Trier · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The antibiotic sulfadiazine (SDZ) can enter the environment by application of manure from antibiotic-treated animals to arable soil. Because antibiotics are explicitly designed to target microorganisms, they likely affect microbes in the soil ecosystem, compromising important soil functions and disturbing processes in nutrient cycles. In a greenhouse experiment, we investigated the impact of sulfadiazine-contaminated pig manure on functional microbial communities involved in key processes of the nitrogen cycle in the root-rhizosphere complexes (RRCs) of maize (Zea mays) and clover (Trifolium alexandrinum). At both the gene and transcript level, we performed real-time PCR using nifH, amoA (in both ammonia-oxidizing bacteria and archaea), nirK, nirS, and nosZ as molecular markers for nitrogen fixation, nitrification, and denitrification. Sampling was performed 10, 20, and 30 days after the application. SDZ affected the abundance pattern of all investigated genes in the RRCs of both plant species (with stronger effects in the RRC of clover) 20 and 30 days after the addition. Surprisingly, effects on the transcript level were less pronounced, which might indicate that parts of the investigated functional groups were tolerant or resistant against SDZ or, as in the case of nifH and clover, have been protected by the nodules.

Indexed as

BiodiversityRhizosphereAnimalsDenitrificationGene Expression ProfilingGenes, ArchaealGenes, BacterialManureMedicagoMetabolic Networks and PathwaysMetagenomeNitrificationNitrogen FixationPlant RootsSulfadiazineSwineManureSulfadiazine

Identifiers

PMID20971872
PMCPMC3008267
OpenAlexW2107573134

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.