Evidence map›Paper›PMID 20971862›Full record

ArticleApplied and environmental microbiology2010

Inositol catabolism, a key pathway in sinorhizobium meliloti for competitive host nodulation.

Petra R A Kohler, Jasmine Y Zheng, Elke Schoffers, Silvia Rossbach

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The transport of mannitol inMicrobiology (Reading, England) · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Analysis ofMicroorganisms · 2022
    Article
  9. How Rhizobia Adapt to the Nodule Environment.Journal of bacteriology · 2021
    Article
  10. Review
  11. Differential Expression ofFrontiers in plant science · 2021
    Article
  12. Article
  13. Article
  14. Deletion of rRNA Operons ofFrontiers in microbiology · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Petra R A KohlerDepartment of Biological Sciences, 3923 Wood Hall, Western Michigan University, Kalamazoo, MI 49008-5410, USA.
Jasmine Y Zheng
Elke Schoffers
Silvia Rossbach
Western Michigan University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nitrogen-fixing symbiont of alfalfa, Sinorhizobium meliloti, is able to use myo-inositol as the sole carbon source. Putative inositol catabolism genes (iolA and iolRCDEB) have been identified in the S. meliloti genome based on their similarities with the Bacillus subtilis iol genes. In this study, functional mutational analysis revealed that the iolA and iolCDEB genes are required for growth not only with the myo-isomer but also for growth with scyllo- and d-chiro-inositol as the sole carbon source. An additional, hypothetical dehydrogenase of the IdhA/MocA/GFO family encoded by the smc01163 gene was found to be essential for growth with scyllo-inositol, whereas the idhA-encoded myo-inositol dehydrogenase was responsible for the oxidation of d-chiro-inositol. The putative regulatory iolR gene, located upstream of iolCDEB, encodes a repressor of the iol genes, negatively regulating the activity of the myo- and the scyllo-inositol dehydrogenases. Mutants with insertions in the iolA, smc01163, and individual iolRCDE genes could not compete against the wild type in a nodule occupancy assay on alfalfa plants. Thus, a functional inositol catabolic pathway and its proper regulation are important nutritional or signaling factors in the S. meliloti-alfalfa symbiosis.

Indexed as

Plant Root NodulationDNA, BacterialDNA Mutational AnalysisGene Expression Regulation, BacterialGenes, BacterialInositolMedicago sativaMetabolic Networks and PathwaysMultigene FamilySinorhizobium melilotiDNA, BacterialInositol

Identifiers

PMID20971862
PMCPMC3008233
OpenAlexW2153360620

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.