Evidence map›Paper›PMID 20971803›Full record

ArticleAmerican journal of physiology. Lung cellular and molecular physiology2011

The air-liquid interface and use of primary cell cultures are important to recapitulate the transcriptional profile of in vivo airway epithelia.

Alejandro A Pezzulo, Timothy D Starner, Todd E Scheetz, Geri L Traver, Ann E Tilley, Ben-Gary Harvey, Ronald G Crystal, Paul B McCray, Joseph Zabner

Abstract read
In one paragraph

Article in American journal of physiology. Lung cellular and molecular physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 233 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
233citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

233 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Frontiers in immunology · 2021
    Pooled it
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173 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alejandro A PezzuloDepartment of Internal Medicine, Univ. of Iowa, Iowa City, 52242, USA.
Timothy D Starner
Todd E Scheetz
Geri L Traver
Ann E Tilley
Ben-Gary Harvey
Ronald G Crystal
Paul B McCray
Joseph Zabner

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024996 · NCRR · WEILL MEDICAL COLL OF CORNELL UNIV · PI IMPERATO-MCGINLEY, JULIANNE L · 2007 to 2011
$49.6M
Vector Core-Core 2P30DK054759 · NIDDK · UNIVERSITY OF IOWA · PI Alejandro Antonio Pezzulo · 1998 to 2026
$30.5M
Role of Alveolar Macrophages in the Accelerated Emphysema of HIV-1 PositiveP50HL084936 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CRYSTAL, RONALD G · 2007 to 2011
$14.2M
Xylitol Enhancement of Bacterial Killing by AirwayP50HL061234 · NHLBI · UNIVERSITY OF IOWA · PI ZABNER, JOSEPH · 1998 to 2007
$13.6M
Candidate Genes for Susceptibility to BronchitisR01HL074326 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CRYSTAL, RONALD G · 2004 to 2007
$2.4M
VIRAL RESPIRATORY PATHOGENS RESEARCH UNIT /VRPRU/-266030040-266030040N01AI030040 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 2003 to 2006
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NCRR NIH HHS UL1 RR024996NCRR NIH HHS UL1-RR-024996NHLBI NIH HHS P50 HL061234NHLBI NIH HHS P50 HL084936NHLBI NIH HHS P50-HL-084936NHLBI NIH HHS P50-HL-61234NHLBI NIH HHS R01 HL074326NHLBI NIH HHS R01-HL-074326NIAID NIH HHS N01 AI030040NIAID NIH HHS N01-AI-30040NIDDK NIH HHS P30 DK054759NIDDK NIH HHS P30-DK-54759
6 · The paper itself

Abstract

Organotypic cultures of primary human airway epithelial cells have been used to investigate the morphology, ion and fluid transport, innate immunity, transcytosis, infection, inflammation, signaling, cilia, and repair functions of this complex tissue. However, we do not know how closely these cultures resemble the airway surface epithelium in vivo. In this study, we examined the genome-wide expression profile of tracheal and bronchial human airway epithelia in vivo and compared it with the expression profile of primary cultures of human airway epithelia grown at the air-liquid interface. For comparison, we also investigated the expression profile of Calu-3 cells grown at the air-liquid interface and primary cultures of human airway epithelia submerged in nutrient media. We found that the transcriptional profile of differentiated primary cultures grown at the air-liquid interface most closely resembles that of in vivo airway epithelia, suggesting that the use of primary cultures and the presence of an air-liquid interface are important to recapitulate airway epithelia biology. We describe a high level of similarity between cells of tracheal and bronchial origin within and between different human donors, which suggests a very robust expression profile that is specific to airway cells.

Indexed as

Transcription, GeneticBronchiCell Culture TechniquesCulture MediaEpithelial CellsGene Expression ProfilingGenome, HumanHumansTissue DonorsTracheaCulture Media

Identifiers

PMID20971803
PMCPMC3023285

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.