Evidence map›Paper›PMID 20970154›Full record

ArticleVirology2011

Patients on HAART often have an excess of unintegrated HIV DNA: implications for monitoring reservoirs.

Luis M Agosto, Megan K Liszewski, Angela Mexas, Erin Graf, Matthew Pace, Jianqing J Yu, Avinash Bhandoola, Una O'Doherty

Abstract readEvaluation Study
In one paragraph

Article in Virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. [Research advances in evaluation and measurement techniques of latent human immunodeficiency virus reservoirs].Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2016
    Article
  11. HIV-1 Eradication: Early Trials (and Tribulations).Trends in molecular medicine · 2016
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. How to best measure HIV reservoirs?Current opinion in HIV and AIDS · 2013
    Review
  19. Article
  20. Eliminating the HIV reservoir.Current HIV/AIDS reports · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Luis M AgostoUniversity of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.
Megan K Liszewski
Angela Mexas
Erin Graf
Matthew Pace
Jianqing J Yu
Avinash Bhandoola
Una O'Doherty
University of Pennsylvania · US

Funding

TRAINING IN VIROLOGYT32AI007324 · NIAID · WISTAR INSTITUTE · PI Paul Bates, Matthew D. Weitzman · 1989 to 2026
$6.8M
Effect of Treg Cells on CD4+Th Immune Responses During Acute FIV InfectionK08AI073102 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI MEXAS, ANGELA M · 2007 to 2011
$647k
Ongoing replication may occur on HAARTR21AI087461 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI O'DOHERTY, UNA T · 2010 to 2011
$431k
A better gene therapy envelope for transducing G0 CD4+ T cellsR21AI081215 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI O'DOHERTY, UNA T · 2009 to 2010
$427k
HIV Restriction in CD4+ T cells: Host and Viral FactorsK02AI078766 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI O'DOHERTY, UNA T · 2008 to 2012
$405k
NIAID NIH HHS 5K02AI078766-03NIAID NIH HHS 7-K08-AI-073102-02NIAID NIH HHS K02 AI078766NIAID NIH HHS K08 AI073102NIAID NIH HHS R21 AI081215NIAID NIH HHS R21 AI081215-01 A1NIAID NIH HHS R21 AI087461NIAID NIH HHS T32 AI007324NIAID NIH HHS T32AI07324
6 · The paper itself

Abstract

HIV establishes a latent reservoir early in infection that is resistant to anti-retroviral therapy and has a slow rate of decay. It is thought that the majority of HIV DNA in treated patients is integrated since unintegrated HIV DNA appears to be unstable. Thus, to monitor the HIV latent reservoir, total HIV DNA is commonly measured in PBMC from infected individuals. We investigated how often total approaches integrated HIV DNA in treated patients. To do this, we first assessed how accurate our integration assay is and determined the error in our measurements of total and integrated HIV DNA. We demonstrated an excess of total over integrated HIV DNA was present in a subset of patients, suggesting that measurements of total HIV DNA do not always correlate to the level of integration. Determining the cause of this excess and its frequency may have important implications for understanding HIV latent reservoir maintenance.

Indexed as

Antiretroviral Therapy, Highly ActiveVirus IntegrationVirus LatencyAlu ElementsCD4-Positive T-LymphocytesCell LineDNA, ViralHIV-1HIV InfectionsHumansPolymerase Chain ReactionSensitivity and SpecificityVirus ReplicationDNA, Viral

Identifiers

PMID20970154
PMCPMC3253773
OpenAlexW2078085800

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.