ArticleBMC genomics2010
Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa.
Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.
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Who cites it
36 citing papers in PubMed, 1 synthesis or guideline pooled it, 71 citations in OpenAlex.
- Discovery of common loci and candidate genes for controlling salt-alkali tolerance and yield-related traits in Brassica napus L.Plant cell reports · 2023Pooled it
- Flavonoid Synthesis-Related Genes Determine the Color of Flower Petals inInternational journal of molecular sciences · 2023Article
- Development and utility of SSR markers based onFrontiers in plant science · 2023Article
- Quantitative Trait Locus Mapping and Identification of Candidate Genes Controlling Flowering Time inFrontiers in plant science · 2020Article
- Root Morphological Traits of Seedlings Are Predictors of Seed Yield and Quality in Winter Oilseed Rape Hybrid Cultivars.Frontiers in plant science · 2020Article
- QTL and Candidate Gene Identification for Silique Length Based on High-Dense Genetic Map inFrontiers in plant science · 2019Article
- A comprehensive and precise set of intervarietal substitution lines to identify candidate genes and quantitative trait loci in oilseed rape (Brassica napus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- QTL Landscape for Oil Content inFrontiers in plant science · 2018Article
- SSR marker variations in Brassica species provide insight into the origin and evolution ofHereditas · 2018Article
- High-density ddRAD linkage and yield-related QTL mapping delimits a chromosomal region responsible for oil content in rapeseed (Breeding science · 2017Article
- Analysis of genetic diversity of rapeseed genetic resources in Japan and core collection construction.Breeding science · 2017Article
- Brassica napus DS-3, encoding a DELLA protein, negatively regulates stem elongation through gibberellin signaling pathway.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Development of Highly Informative Genome-Wide Single Sequence Repeat Markers for Breeding Applications in Sesame and Construction of a Web Resource: SisatBase.Frontiers in plant science · 2017Article
- Quantitative Trait Locus Mapping of Salt Tolerance and Identification of Salt-Tolerant Genes inFrontiers in plant science · 2017Article
- Identification of BnaYUCCA6 as a candidate gene for branch angle in Brassica napus by QTL-seq.Scientific reports · 2016Article
- The first genetic map of a synthesized allohexaploid Brassica with A, B and C genomes based on simple sequence repeat markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Multigenic Control of Pod Shattering Resistance in Chinese Rapeseed Germplasm Revealed by Genome-Wide Association and Linkage Analyses.Frontiers in plant science · 2016Article
- Genome-Wide Identification and Transferability of Microsatellite Markers between Palmae Species.Frontiers in plant science · 2016Article
- Molecular Mapping and QTL for Expression Profiles of Flavonoid Genes inFrontiers in plant science · 2016Article
- Linkage and regional association analysis reveal two new tightly-linked major-QTLs for pod number and seed number per pod in rapeseed (Brassica napus L.).Scientific reports · 2015Article
Corrections and comments
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Authors and funding
11 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe Multinational Brassica rapa Genome Sequencing Project (BrGSP) has developed valuable genomic resources, including BAC libraries, BAC-end sequences, genetic and physical maps, and seed BAC sequences for Brassica rapa. An integrated linkage map between the amphidiploid B. napus and diploid B. rapa will facilitate the rapid transfer of these valuable resources from B. rapa to B. napus (Oilseed rape, Canola).
resultsIn this study, we identified over 23,000 simple sequence repeats (SSRs) from 536 sequenced BACs. 890 SSR markers (designated as BrGMS) were developed and used for the construction of an integrated linkage map for the A genome in B. rapa and B. napus. Two hundred and nineteen BrGMS markers were integrated to an existing B. napus linkage map (BnaNZDH). Among these mapped BrGMS markers, 168 were only distributed on the A genome linkage groups (LGs), 18 distrubuted both on the A and C genome LGs, and 33 only distributed on the C genome LGs. Most of the A genome LGs in B. napus were collinear with the homoeologous LGs in B. rapa, although minor inversions or rearrangements occurred on A2 and A9. The mapping of these BAC-specific SSR markers enabled assignment of 161 sequenced B. rapa BACs, as well as the associated BAC contigs to the A genome LGs of B. napus.
conclusionThe genetic mapping of SSR markers derived from sequenced BACs in B. rapa enabled direct links to be established between the B. napus linkage map and a B. rapa physical map, and thus the assignment of B. rapa BACs and the associated BAC contigs to the B. napus linkage map. This integrated genetic linkage map will facilitate exploitation of the B. rapa annotated genomic resources for gene tagging and map-based cloning in B. napus, and for comparative analysis of the A genome within Brassica species.
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