Evidence map›Paper›PMID 20969648›Full record

ArticleMolecular microbiology2010

Transcriptome analysis of nitrate assimilation in Aspergillus nidulans reveals connections to nitric oxide metabolism.

Thorsten Schinko, Harald Berger, Wanseon Lee, Andreas Gallmetzer, Katharina Pirker, Robert Pachlinger, Ingrid Buchner, Thomas Reichenauer, Ulrich Güldener, Joseph Strauss

Abstract read
In one paragraph

Article in Molecular microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Nitric Oxide in Fungi: Production and Function.Journal of fungi (Basel, Switzerland) · 2024
    Review
  6. Article
  7. Nitric Oxide Metabolism Affects Germination inJournal of fungi (Basel, Switzerland) · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. HJournal of fungi (Basel, Switzerland) · 2021
    Article
  12. Article
  13. Article
  14. Regulators of nitric oxide signaling triggered by host perception in a plant pathogen.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Thorsten SchinkoFungal Genetics and Genomics Unit, Department of Applied Genetics and Cell Biology, Austrian Institute of Technology and BOKU University Vienna, Muthgasse 18, 1190 Vienna, Austria.
Harald Berger
Wanseon Lee
Andreas Gallmetzer
Katharina Pirker
Robert Pachlinger
Ingrid Buchner
Thomas Reichenauer
Ulrich Güldener
Joseph Strauss

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrate is a dominant form of inorganic nitrogen (N) in soils and can be efficiently assimilated by bacteria, fungi and plants. We studied here the transcriptome of the short-term nitrate response using assimilating and non-assimilating strains of the model ascomycete Aspergillus nidulans. Among the 72 genes positively responding to nitrate, only 18 genes carry binding sites for the pathway-specific activator NirA. Forty-five genes were repressed by nitrate metabolism. Because nirA(-) strains are N-starved at nitrate induction conditions, we also compared the nitrate transcriptome with N-deprived conditions and found a partial overlap of differentially regulated genes between these conditions. Nitric oxide (NO)-metabolizing flavohaemoglobins were found to be co-regulated with nitrate assimilatory genes. Subsequent molecular characterization revealed that the strongly inducible FhbA is required for full activity of nitrate and nitrite reductase enzymes. The co-regulation of NO-detoxifying and nitrate/nitrite assimilating systems may represent a conserved mechanism, which serves to neutralize nitrosative stress imposed by an external NO source in saprophytic and pathogenic fungi. Our analysis using membrane-permeable NO donors suggests that signalling for NirA activation only indirectly depends on the nitrate transporters NrtA (CrnA) and NrtB (CrnB).

Indexed as

Gene Expression ProfilingAnion Transport ProteinsAspergillus nidulansFungal ProteinsGene Expression Regulation, FungalNitrate ReductaseNitratesNitrate TransportersNitric OxideNitrite ReductasesAnion Transport ProteinsFungal ProteinsNitrate ReductaseNitratesNitrate TransportersNitric OxideNitrite Reductases

Identifiers

PMID20969648
PMCPMC3020322

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.