Evidence map›Paper›PMID 20967439›Full record

ArticleUrological research2010

Analysis of mixed stones is prone to error: a study with US laboratories using micro CT for verification of sample content.

Amy E Krambeck, James E Lingeman, James A McAteer, James C Williams

Abstract read
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In one paragraph

Article in Urological research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
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  9. Article
  10. Nomogram to predict uric acid kidney stones based on patient's age, BMI and 24-hour urine profiles: A multicentre validation.Canadian Urological Association journal = Journal de l'Association des urologues du Canada
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 1 country.

Amy E KrambeckDepartment of Urology, Mayo Clinic College of Medicine, Rochester, MN, USA.
James E Lingeman
James A McAteer
James C Williams
Indiana University School of MedicineMayo Clinic · USMethodist Hospital · USUniversity School · US

Funding

The Structural Basis of Kidney Stone FragilityR01DK059933 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI WILLIAMS, JAMES C · 2004 to 2011
$2.4M
NIDDK NIH HHS R01 DK059933NIDDK NIH HHS R01 DK59933
6 · The paper itself

Abstract

This project sought to test the ability of commercial stone analysis laboratories to correctly analyze urinary stones. Human stone specimens were cleaved into pieces, and the pieces of each specimen were verified as being similar using micro-computed tomography (micro CT), a non-destructive method. Thus, similar specimens from 25 stones were sent to five laboratories, and a sixth piece was kept for analysis in our laboratory using Fourier-transform infrared spectroscopy (FT-IR). The results showed that laboratories were very good at analyzing pure specimens, but with mixed specimens the accuracy and consistency varied. In six stones containing apatite, a mineral easily identified using micro CT, apatite was missed 20% of the time. Struvite content in the specimens was inconsistently reported, with laboratories differing in their reports of the presence of struvite in six of the 25 stones (24%). A mixed stone containing atazanavir was not reported by any of the laboratories as containing that drug. Nomenclature differed among the laboratories, especially with regard to apatite, which was variously reported as hydroxyapatite, carbonate apatite, or as apatite with calcium carbonate. One laboratory reported protein in every stone, while for all others protein was reported in only one stone. We conclude that physicians need to be aware that reports on mixed stones, which represent >90% of all calculi, can be erroneous. It is likely that supplying a greater amount of stone material will assist a laboratory in making a correct analysis of mixed stones. Also, standardization of nomenclature could assist in analysis reproducibility, but this remains to be tested.

Indexed as

ApatitesCalcium OxalateHumansSpectroscopy, Fourier Transform InfraredTomography, X-Ray ComputedUric AcidUrinary CalculiApatitesCalcium OxalateUric Acid

Identifiers

PMID20967439
OpenAlexW1972297564

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.