ArticlePlant cell reports2011
Development, characterization, and cross-species/genera transferability of SSR markers for rubber tree (Hevea brasiliensis).
Article in Plant cell reports, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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31 citing papers in PubMed.
- Genome-wide characterization leading to simple sequence repeat (SSR) markers development in Shorea robusta.Functional & integrative genomics · 2023Article
- Microsatellite Characteristics of Silver Carp (Genes · 2022Article
- Genome-wide development and application of miRNA-SSR markers inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Development of a new set of genic SSR markers in the genus3 Biotech · 2021Article
- Identification of Candidate Gene-Based Markers for Girth Growth in Rubber Trees.Plants (Basel, Switzerland) · 2021Article
- Full-length SMRT transcriptome sequencing and microsatellite characterization in Paulownia catalpifolia.Scientific reports · 2021Article
- Article
- Development of EST-SSR markers for genetic diversity analysis in coconut (Cocos nucifera L.).Molecular biology reports · 2020Article
- Evaluation of Cross-Species Transferability of SSR Markers inPlants (Basel, Switzerland) · 2020Article
- Article
- The Chemical Exposome of Human Aging.Frontiers in genetics · 2020Review
- Biosynthesis of Natural Rubber: Current State and Perspectives.International journal of molecular sciences · 2018Review
- Mining and comparative survey of EST-SSR markers among members of Euphorbiaceae family.Molecular biology reports · 2018Article
- Isolation and characterization of microsatellite markers in Garcinia gummi-gutta by next-generation sequencing and cross-species amplification.Journal of genetics · 2017Article
- Exploring genetic variability within lentil (Lens culinaris Medik.) and across related legumes using a newly developed set of microsatellite markers.Molecular biology reports · 2014Article
- Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don.Plant cell reports · 2014Article
- De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers.BMC genomics · 2014Article
- Transferability of molecular markers from major legumes to Lathyrus spp. for their application in mapping and diversity studies.Molecular biology reports · 2014Article
- Transferability of simple sequence repeat (SSR) markers developed in guava (Psidium guajava L.) to four Myrtaceae species.Molecular biology reports · 2013Article
- Candidate gene markers for Candidatus Liberibacter asiaticus for detecting citrus greening disease.Journal of biosciences · 2013Article
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6 authors.
Funding
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Abstract
Genomic simple sequence repeat (SSR) markers are particularly valuable in studies of genetic diversity, evolution, genetic linkage map construction, quantitative trait loci tagging, and marker-assisted selection because of their multi-allelic nature, reproducibility, co-dominant inheritance, high abundance, and extensive genome coverage. The traditional methods of SSR marker development, such as genomic-SSR hybrid screening and microsatellite enrichment, have the disadvantages of high cost and complex operation. The selectively amplified microsatellite method is less costly and highly efficient as well as being simple and convenient. In this study, 252 sequences with SSRs were cloned from the rubber tree (Hevea brasiliensis) genome from which 258 SSR loci were obtained. The average repeat number was six. There were only 10 (3.9%) mononucleotide, trinucleotide, and pentanucleotide repeats, whereas the remaining 248 (96.1%) were dinucleotide repeats, including 128 (49.6%) GT/CA repeats, 118 (45.7%) GA/CT repeats, and 2 (0.8%) AT/TA repeats. A total of 126 primer pairs (see ESM) were successfully designed of which 36 primer pairs generated polymorphic products from 12 accessions of the cultivated species, 4 related species, and 3 species of the family Euphorbiaceae. In addition, investigations based on four genomic SSRs (GAR4, ACR22, CTR25, and GTR28) by cloning and sequencing provided evidence for cross-species/genera applicability, and homologous sequences were obtained from the rubber tree and Euphorbiaceae. Further analysis about the variation of the flanking regions of the four markers was carried out.
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