Evidence map›Paper›PMID 20959808›Full record

ArticleThe EMBO journal2010

Polypeptide in the chaperonin cage partly protrudes out and then folds inside or escapes outside.

Fumihiro Motojima, Masasuke Yoshida

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Temperature Regulates Stability, Ligand Binding (MgJournal of the American Chemical Society · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. How do chaperonins fold protein?Biophysics (Nagoya-shi, Japan) · 2015
    Review
  8. Article
  9. Probing water density and dynamics in the chaperonin GroEL cavity.Journal of the American Chemical Society · 2014
    Article
  10. Symmetric GroEL:GroES2 complexes are the protein-folding functional form of the chaperonin nanomachine.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  11. GroEL and CCT are catalytic unfoldases mediating out-of-cage polypeptide refolding without ATP.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  12. Article
  13. Article
  14. Article
  15. Revisiting the contribution of negative charges on the chaperonin cage wall to the acceleration of protein folding.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Fumihiro MotojimaDepartment of Molecular Bioscience, Faculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan.
Masasuke Yoshida
Kyoto Sangyo University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The current mechanistic model of chaperonin-assisted protein folding assumes that the substrate protein in the cage, formed by GroEL central cavity capped with GroES, is isolated from outside and exists as a free polypeptide. However, using ATPase-deficient GroEL mutants that keep GroES bound, we found that, in the rate-limiting intermediate of a chaperonin reaction, the unfolded polypeptide in the cage partly protrudes through a narrow space near the GroEL/GroES interface. Then, the entire polypeptide is released either into the cage or to the outside medium. The former adopts a native structure very rapidly and the latter undergoes spontaneous folding. Partition of the in-cage folding and the escape varies among substrate proteins and is affected by hydrophobic interaction between the polypeptide and GroEL cavity wall. The ATPase-active GroEL with decreased in-cage folding produced less of a native model substrate protein in Escherichia coli cells. Thus, the polypeptide in the critical GroEL-GroES complex is neither free nor completely confined in the cage, but it is interacting with GroEL's apical region, partly protruding to outside.

Indexed as

AnimalsChaperonin 10Chaperonin 60ChaperoninsEscherichia coliEscherichia coli ProteinsGene ExpressionHydrophobic and Hydrophilic InteractionsMiceModels, MolecularMutationPeptidesProtein DenaturationProtein FoldingRibulose-Bisphosphate CarboxylaseTetrahydrofolate DehydrogenaseChaperonin 10Chaperonin 60ChaperoninsEscherichia coli ProteinsPeptidesRibulose-Bisphosphate CarboxylaseTetrahydrofolate DehydrogenaseThiosulfate Sulfurtransferase

Identifiers

PMID20959808
PMCPMC3020636
OpenAlexW2166443214

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.