Evidence map›Paper›PMID 20957169›Full record

ArticleInternational journal of nanomedicine2010

Chitosanase-based method for RNA isolation from cells transfected with chitosan/siRNA nanocomplexes for real-time RT-PCR in gene silencing.

Mohamad Alameh, Myriam Jean, Diogo Dejesus, Michael D Buschmann, Abderrazzak Merzouki

Open access · goldAbstract read
In one paragraph

Article in International journal of nanomedicine, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. pH-dependent RNA isolation from cells encapsulated in chitosan-based biomaterials.International journal of biological macromolecules · 2020
    Article
  3. Anti-F1000Research · 2020
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
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  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mohamad AlamehInstitute of Biomedical Engineering, Department of Chemical Engineering, École Polytechnique, Station Centreville, Montréal, QC, Canada.
Myriam Jean
Diogo Dejesus
Michael D Buschmann
Abderrazzak Merzouki
Polytechnique Montréal · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

Chitosan, a well known natural cationic polysaccharide, has been successfully implemented in vitro and in vivo as a nonviral delivery system for both plasmid DNA and siRNA. While using chitosan/siRNA polyplexes to knock down specific targets, we have underestimated the effect of nucleic acids binding to chitosan when extracting RNA for subsequent quantitative PCR evaluation of silencing. In vitro transfection using chitosan/siRNA-based polyplexes reveals a very poor recovery of total RNA especially when using low cell numbers in 96 well plates. Here, we describe a method that dramatically enhances RNA extraction from chitosan/siRNA-treated cells by using an enzymatic treatment with a type III chitosanase. We show that chitosanase treatment prior to RNA extraction greatly enhances the yield and the integrity of extracted RNA. This method will therefore eliminate the bias associated with lower RNA yield and integrity when quantifying gene silencing of chitosan-based systems using quantitative real time PCR.

Indexed as

Gene SilencingCaco-2 CellsChitosanDrug Delivery SystemsGlycoside HydrolasesHep G2 CellsHT29 CellsHumansIn Vitro TechniquesNanomedicineNanoparticlesReverse Transcriptase Polymerase Chain ReactionRNARNA, Small InterferingTransfectionChitosanchitosanaseGlycoside HydrolasesRNARNA, Small InterferingchitosanchitosanaseDPP-IV gene silencingqPCRRINsiRNA

Identifiers

PMID20957169
PMCPMC2950405
OpenAlexW2123423652

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.