Evidence map›Paper›PMID 20956529›Full record

ArticleThe Journal of biological chemistry2010

Transcription elongation regulator 1 is a co-integrator of the cell fate determination factor Dachshund homolog 1.

Jie Zhou, Yang Liu, Wei Zhang, Vladimir M Popov, Min Wang, Nagarajan Pattabiraman, Carlos Suñé, Ales Cvekl, Kongming Wu, Jie Jiang and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

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  16. The Eyes Absent proteins in development and disease.Cellular and molecular life sciences : CMLS · 2013
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Jie ZhouDepartment of Cancer Biology, Thomas Jefferson University, Philadelphia, Pennsylvania 19107, USA.
Yang Liu
Wei Zhang
Vladimir M Popov
Min Wang
Nagarajan Pattabiraman
Carlos Suñé
Ales Cvekl
Kongming Wu
Jie Jiang
Chenguang Wang
Richard G Pestell
Thomas Jefferson University · USAlbert Einstein College of Medicine · USConsejo Superior de Investigaciones Científicas · ESQilu Hospital of Shandong University · CN

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL P SILVER · 1995 to 2026
$94.8M
Initiation and Maintenance In Mammary TumorigenesisR01CA075503 · NCI · YESHIVA UNIVERSITY · PI PESTELL, RICHARD G · 1998 to 2011
$4.6M
CYCLIN D1 FUNCTION IN PROSTATE CANCERR01CA086072 · NCI · YESHIVA UNIVERSITY · PI PESTELL, RICHARD G · 2001 to 2013
$3.3M
REGULATION OF CYCLIN D1 EXPRESSIONR01CA070896 · NCI · YESHIVA UNIVERSITY · PI PESTELL, RICHARD G · 2000 to 2010
$3.2M
Medical Research CouncilNCI NIH HHS P30 CA056036NCI NIH HHS P30CA56036NCI NIH HHS R01 CA070896NCI NIH HHS R01 CA075503NCI NIH HHS R01 CA086072NCI NIH HHS R01CA70896NCI NIH HHS R01CA75503NCI NIH HHS R01CA86072
6 · The paper itself

Abstract

DACH1 (Dachshund homolog 1) is a key component of the retinal determination gene network and regulates gene expression either indirectly as a co-integrator or through direct DNA binding. The current studies were conducted to understand, at a higher level of resolution, the mechanisms governing DACH1-mediated transcriptional repression via DNA sequence-specific binding. DACH1 repressed gene transcription driven by the DACH1-responsive element (DRE). Recent genome-wide ChIP-Seq analysis demonstrated DACH1 binding sites co-localized with Forkhead protein (FOX) binding sites. Herein, DACH1 repressed, whereas FOX proteins enhanced, both DRE and FOXA-responsive element-driven gene expression. Reduced DACH1 expression using a shRNA approach enhanced FOX protein activity. As DACH1 antagonized FOX target gene expression and attenuated FOX signaling, we sought to identify limiting co-integrator proteins governing DACH1 signaling. Proteomic analysis identified transcription elongation regulator 1 (TCERG1) as the transcriptional co-regulator of DACH1 activity. The FF2 domain of TCERG1 was required for DACH1 binding, and the deletion of FF2 abolished DACH1 trans-repression function. The carboxyl terminus of DACH1 was necessary and sufficient for TCERG1 binding. Thus, DACH1 represses gene transcription through direct DNA binding to the promoter region of target genes by recruiting the transcriptional co-regulator, TCERG1.

Indexed as

DNAEye ProteinsForkhead Transcription FactorsHEK293 CellsHeLa CellsHumansProtein Structure, TertiaryRepressor ProteinsResponse ElementsSignal TransductionTranscriptional Elongation FactorsTranscription FactorsDACH1 protein, humanDNAEye ProteinsForkhead Transcription FactorsRepressor ProteinsTCERG1 protein, humanTranscriptional Elongation FactorsTranscription Factors

Identifiers

PMID20956529
PMCPMC3001014
OpenAlexW1972071622

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.