Evidence map›Paper›PMID 20954689›Full record

ArticleChemical research in toxicology2010

Structures of 2-acetylaminofluorene modified DNA revisited: insight into conformational heterogeneity.

Satyakam Patnaik, Bongsup P Cho

Open access · greenAbstract read
In one paragraph

Article in Chemical research in toxicology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. A Comprehensive View of Translesion Synthesis in Escherichia coli.Microbiology and molecular biology reviews : MMBR · 2020
    Review
  3. Article
  4. Article
  5. Repair-Resistant DNA Lesions.Chemical research in toxicology · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Satyakam PatnaikDepartment of Biomedical and Pharmaceutical Sciences, College of Pharmacy, University of Rhode Island, Kingston, Rhode Island 02881, USA.
Bongsup P Cho
University of Rhode Island · US

Funding

Training CoreP20GM103430 · NIGMS · UNIVERSITY OF RHODE ISLAND · PI Bongsup P Cho · 2012 to 2026
$63.6M
UNDERGRADUATE RESEARCH AND SEMINARSP20RR016457 · NCRR · UNIVERSITY OF RHODE ISLAND · PI SHAKARIAN, ALISON M · 2001 to 2011
$35.5M
Sequence Effects of Arylamine-DNA Adducts: Repair and ReplicationR01CA098296 · NCI · UNIVERSITY OF RHODE ISLAND · PI CHO, BONGSUP P · 2003 to 2013
$2.6M
Sequence Effects of Arylamine-DNA Adducts: Repair and ReplicationR56CA098296 · NCI · UNIVERSITY OF RHODE ISLAND · PI CHO, BONGSUP P · 2008 to 2008
$300k
NCI NIH HHS CA098296NCI NIH HHS R01 CA098296NCI NIH HHS R56 CA098296NCRR NIH HHS P20 RR016457
6 · The paper itself

Abstract

Despite the extensive data on dG-AAF, the major DNA adduct derived from the model carcinogen 2-acetylaminofluorene, little is known with respect to its solution structures. Here, we provide NMR/CD evidence for three conformers of dG-AAF in duplex DNA: major groove B-type (B), base-displaced stacked (S), and minor groove wedge (W). The S/B/W-conformational heterogeneities were found to be sensitive to the nature of the flanking DNA sequence contexts and pH.

Indexed as

2-AcetylaminofluoreneCarcinogensCircular DichroismDNADNA AdductsHydrogen-Ion ConcentrationMagnetic Resonance SpectroscopyMolecular ConformationTemperature2-AcetylaminofluoreneCarcinogensDNADNA Adducts

Identifiers

PMID20954689
PMCPMC2981646
OpenAlexW2031361375

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.