Evidence map›Paper›PMID 20953190›Full record

ArticleNature genetics2010

A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.

Genetic Analysis of Psoriasis Consortium & the Wellcome Trust Case Control Consortium 2, Amy Strange, Francesca Capon, Chris C A Spencer, Jo Knight, Michael E Weale, Michael H Allen, Anne Barton, Gavin Band, Céline Bellenguez and 75 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 534 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
534citing papers in PubMed, 4 pooled it
33.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

534 citing papers in PubMed, 4 syntheses or guidelines pooled it, 1,051 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Associations betweenBioMed research international · 2021
    Pooled it
  5. Trial
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

474 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

85 authors at 20 institutions in 10 countries.

Genetic Analysis of Psoriasis Consortium & the Wellcome Trust Case Control Consortium 2Wellcome Trust Centre for Human Genetics, Oxford, UK.
Amy Strange
Francesca Capon
Chris C A Spencer
Jo Knight
Michael E Weale
Michael H Allen
Anne Barton
Gavin Band
Céline Bellenguez
Judith G M Bergboer
Jenefer M Blackwell
Elvira Bramon
Suzannah J Bumpstead
Juan P Casas
Michael J Cork
Aiden Corvin
Panos Deloukas
Alexander Dilthey
Audrey Duncanson
Sarah Edkins
Xavier Estivill
Oliver Fitzgerald
Colin Freeman
Emiliano Giardina
Emma Gray
Angelika Hofer
Ulrike Hüffmeier
Sarah E Hunt
Alan D Irvine
Janusz Jankowski
Brian Kirby
Cordelia Langford
Jesús Lascorz
Joyce Leman
Stephen Leslie
Lotus Mallbris
Hugh S Markus
Christopher G Mathew
W H Irwin McLean
Ross McManus
Rotraut Mössner
Loukas Moutsianas
Asa T Naluai
Frank O Nestle
Giuseppe Novelli
Alexandros Onoufriadis
Colin N A Palmer
Carlo Perricone
Matti Pirinen
Robert Plomin
Simon C Potter
Ramon M Pujol
Anna Rautanen
Eva Riveira-Munoz
Anthony W Ryan
Wolfgang Salmhofer
Lena Samuelsson
Stephen J Sawcer
Joost Schalkwijk
Catherine H Smith
Mona Ståhle
Zhan Su
Rachid Tazi-Ahnini
Heiko Traupe
Ananth C Viswanathan
Richard B Warren
Wolfgang Weger
Katarina Wolk
Nicholas Wood
Jane Worthington
Helen S Young
Patrick L J M Zeeuwen
Adrian Hayday
A David Burden
Christopher E M Griffiths
Juha Kere
André Reis
Gilean McVean
David M Evans
Matthew A Brown
Jonathan N Barker
Leena Peltonen
Peter Donnelly
Richard C Trembath
King's College London · GBCentre for Human Genetics · GBRadboud University Nijmegen · NLWellcome Sanger Institute · GBManchester Academic Health Science Centre · GBNational Health Service · GBTrinity College Dublin · IEUniversity of Helsinki · FIUniversity of Oxford · GBFriedrich-Alexander-Universität Erlangen-Nürnberg · DEMedical University of Graz · ATMoorfields Eye Hospital NHS Foundation Trust · GBThe University of Queensland · AUUniversity of Dundee · GBSt George's, University of London · GBUniversity of Münster · DEUniversity of Rome Tor Vergata · ITWestern Infirmary · GBAddenbrooke's Hospital · GBCentre for Genomic Regulation · ES

Funding

Department of Health PDA/02/06/016Medical Research Council G0000934Medical Research Council G0600705Medical Research Council G0601387Medical Research Council G0700314Medical Research Council G0800582Medical Research Council G0901310Medical Research Council G19/2Wellcome Trust 068545/Z/02Wellcome Trust 079643Wellcome Trust 083948/Z/07/ZWellcome Trust 084726Wellcome Trust 085780
6 · The paper itself

Abstract

To identify new susceptibility loci for psoriasis, we undertook a genome-wide association study of 594,224 SNPs in 2,622 individuals with psoriasis and 5,667 controls. We identified associations at eight previously unreported genomic loci. Seven loci harbored genes with recognized immune functions (IL28RA, REL, IFIH1, ERAP1, TRAF3IP2, NFKBIA and TYK2). These associations were replicated in 9,079 European samples (six loci with a combined P < 5 × 10⁻⁸ and two loci with a combined P < 5 × 10⁻⁷). We also report compelling evidence for an interaction between the HLA-C and ERAP1 loci (combined P = 6.95 × 10⁻⁶). ERAP1 plays an important role in MHC class I peptide processing. ERAP1 variants only influenced psoriasis susceptibility in individuals carrying the HLA-C risk allele. Our findings implicate pathways that integrate epidermal barrier dysfunction with innate and adaptive immune dysregulation in psoriasis pathogenesis.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyAminopeptidasesChromosome MappingChromosomes, HumanChromosomes, Human, XEuropeGenetic VariationHLA-C AntigensHumansMajor Histocompatibility ComplexMinor Histocompatibility AntigensPolymorphism, Single NucleotidePsoriasisReference ValuesRisk AssessmentAminopeptidasesERAP1 protein, humanHLA-C AntigensMinor Histocompatibility Antigens

Identifiers

PMID20953190
PMCPMC3749730
OpenAlexW2105842551

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.