Evidence map›Paper›PMID 20953189›Full record

ArticleNature genetics2010

Genome-wide association analysis identifies three psoriasis susceptibility loci.

Philip E Stuart, Rajan P Nair, Eva Ellinghaus, Jun Ding, Trilokraj Tejasvi, Johann E Gudjonsson, Yun Li, Stephan Weidinger, Bernadette Eberlein, Christian Gieger and 14 more

Registry-linked trialAbstract read
In one paragraph

Article in Nature genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01704599 (A Single-Center, Open-Label Study to Assess the Effects of the Addition of Modulators of Homocysteine to Adalimumab Therapy in the Treatment of Moderate to Severe Plaque Psoriasis Evaluated With the PASI, PGA and DLQI), which is not on this map. Cited by 177 papers, 17 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed, 17 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01704599 phase1 / phase2terminatednot on this map

A Single-Center, Open-Label Study to Assess the Effects of the Addition of Modulators of Homocysteine to Adalimumab Therapy in the Treatment of Moderate to Severe Plaque Psoriasis Evaluated With the PASI, PGA and DLQI

TypeinterventionalSponsorWayne State UniversityRan2009 to 2014Enrolled8ConditionsPsoriasisArmsHumira Then Humira plus 3 B vitamins
3 · Its place in the literature

Who cites it

177 citing papers in PubMed, 17 syntheses or guidelines pooled it.

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  8. Genetic comorbidities in Parkinson's disease.Human molecular genetics · 2014
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117 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Philip E StuartDepartment of Dermatology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Rajan P Nair
Eva Ellinghaus
Jun Ding
Trilokraj Tejasvi
Johann E Gudjonsson
Yun Li
Stephan Weidinger
Bernadette Eberlein
Christian Gieger
H Erich Wichmann
Manfred Kunz
Robert Ike
Gerald G Krueger
Anne M Bowcock
Ulrich Mrowietz
Henry W Lim
John J Voorhees
Gonçalo R Abecasis
Michael Weichenthal
Andre Franke
Proton Rahman
Dafna D Gladman
James T Elder

Funding

Linkage analysis of familial psoriasis(Supplement)R01AR042742 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD · 1994 to 2021
$10.1M
Genome-Wide SNP Association in PsoriasisR01AR050266 · NIAMS · WASHINGTON UNIVERSITY · PI BOWCOCK, ANNE MARY · 2007 to 2016
$5.7M
Identification of Psoriatic Arthritis Genes in the MHCR01AR050511 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD · 2004 to 2013
$4.2M
Combined Analysis of Gene Expression and DNA Variation in PsoriasisR01AR054966 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD · 2007 to 2011
$3.2M
Computational and Statistical Models for Human PedigreesR01HG002651 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2003 to 2008
$2.9M
Quality Control Genotype Calling and Study Design for 1000 Genomes ProjectU01HG005214 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2009 to 2010
$2.0M
CIHRNHGRI NIH HHS R01 HG002651NHGRI NIH HHS R01HG002651NHGRI NIH HHS U01 HG005214NHGRI NIH HHS U01HG005214NIAMS NIH HHS R01 AR042742NIAMS NIH HHS R01 AR050266NIAMS NIH HHS R01AR050266NIAMS NIH HHS R01 AR050511NIAMS NIH HHS R01AR050511NIAMS NIH HHS R01 AR054966NIAMS NIH HHS R01AR054966NIAMS NIH HHS R01AR42742
6 · The paper itself

Abstract

We carried out a meta-analysis of two recent psoriasis genome-wide association studies with a combined discovery sample of 1,831 affected individuals (cases) and 2,546 controls. One hundred and two loci selected based on P value rankings were followed up in a three-stage replication study including 4,064 cases and 4,685 controls from Michigan, Toronto, Newfoundland and Germany. In the combined meta-analysis, we identified three new susceptibility loci, including one at NOS2 (rs4795067, combined P = 4 × 10⁻¹¹), one at FBXL19 (rs10782001, combined P = 9 × 10⁻¹⁰) and one near PSMA6-NFKBIA (rs12586317, combined P = 2 × 10⁻⁸). All three loci were also associated with psoriatic arthritis (rs4795067, combined P = 1 × 10⁻⁵; rs10782001, combined P = 4 × 10⁻⁸; and rs12586317, combined P = 6 × 1⁻⁵) and purely cutaneous psoriasis (rs4795067, combined P = 1 × 10⁻⁸; rs10782001, combined P = 2 × 10⁻⁶; and rs12586317, combined P = 1 × 10⁻⁶). We also replicated a recently identified association signal near RNF114 (rs495337, combined P = 2 × 10⁻⁷).

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyPolymorphism, Single NucleotideArthritis, PsoriaticCase-Control StudiesDNA-Binding ProteinsF-Box ProteinsGenotypeGermanyHumansI-kappa B ProteinsMichiganNewfoundland and LabradorNF-KappaB Inhibitor alphaNitric Oxide Synthase Type IIOntarioDNA-Binding ProteinsF-Box ProteinsFBXL19 protein, humanI-kappa B ProteinsNF-KappaB Inhibitor alphaNFKBIA protein, humanNitric Oxide Synthase Type IINOS2 protein, humanProteasome Endopeptidase ComplexPSMA6 protein, human

Identifiers

PMID20953189
PMCPMC2965799

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.