Evidence map›Paper›PMID 20952574›Full record

ArticleJournal of bacteriology2010

Expression of the Streptomyces coelicolor SoxR regulon is intimately linked with actinorhodin production.

Rica Dela Cruz, Yang Gao, Sahitya Penumetcha, Rebecca Sheplock, Katherine Weng, Monica Chander

Abstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Multi-Omics Analysis of the Effect of cAMP on Actinorhodin Production inFrontiers in bioengineering and biotechnology · 2020
    Article
  10. The Colorful World of Extracellular Electron Shuttles.Annual review of microbiology · 2017
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Bacterial iron-sulfur cluster sensors in mammalian pathogens.Metallomics : integrated biometal science · 2015
    Review
  17. Fe-S proteins that regulate gene expression.Biochimica et biophysica acta · 2015
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Rica Dela CruzDepartment of Biology, Bryn Mawr College, 101 North Merion Avenue, Bryn Mawr, Pennsylvania 19010, USA.
Yang Gao
Sahitya Penumetcha
Rebecca Sheplock
Katherine Weng
Monica Chander
Bryn Mawr College · US

Funding

Regulation of Streptomyces differentiation and antibiotic production by SoxRR15GM093366 · NIGMS · BRYN MAWR COLLEGE · PI CHANDER, MONICA · 2010 to 2014
$488k
NIGMS NIH HHS R15 GM093366NIGMS NIH HHS R15GM093366
6 · The paper itself

Abstract

The [2Fe-2S]-containing transcription factor SoxR is conserved in diverse bacteria. SoxR is traditionally known as the regulator of a global oxidative stress response in Escherichia coli, but recent studies suggest that this function may be restricted to enteric bacteria. In the vast majority of nonenterics, SoxR is predicted to mediate a response to endogenously produced redox-active metabolites. We have examined the regulation and function of the SoxR regulon in the model antibiotic-producing filamentous bacterium Streptomyces coelicolor. Unlike the E. coli soxR deletion mutant, the S. coelicolor equivalent is not hypersensitive to oxidants, indicating that SoxR does not potentiate antioxidant defense in the latter. SoxR regulates five genes in S. coelicolor, including those encoding a putative ABC transporter, two oxidoreductases, a monooxygenase, and a possible NAD-dependent epimerase/dehydratase. Expression of these genes depends on the production of the benzochromanequinone antibiotic actinorhodin and requires intact [2Fe-2S] clusters in SoxR. These data indicate that actinorhodin, or a redox-active precursor, modulates SoxR activity in S. coelicolor to stimulate the production of a membrane transporter and proteins with homology to actinorhodin-tailoring enzymes. While the role of SoxR in S. coelicolor remains under investigation, these studies support the notion that SoxR has been adapted to perform distinct physiological functions to serve the needs of organisms that occupy different ecological niches and face different environmental challenges.

Indexed as

Amino Acid SequenceAnthraquinonesBacterial ProteinsBenzoisochromanequinonesGene Expression Regulation, BacterialMolecular Sequence DataMutationOxidantsPromoter Regions, GeneticProtein BindingStreptomyces coelicolorTranscription FactorsactinorhodinAnthraquinonesBacterial ProteinsBenzoisochromanequinonesOxidantsSoxR protein, BacteriaTranscription Factors

Identifiers

PMID20952574
PMCPMC3008532
OpenAlexW2103915079

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.