Evidence map›Paper›PMID 20949076›Full record

ArticlePLoS pathogens2010

Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection.

Julia Oh, Eula Fung, Ulrich Schlecht, Ronald W Davis, Guri Giaever, Robert P St Onge, Adam Deutschbauer, Corey Nislow

Abstract readValidation Study
In one paragraph

Article in PLoS pathogens, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Application of the Mutant Libraries forInternational journal of molecular sciences · 2022
    Review
  4. Article
  5. International journal of molecular sciences · 2022
    Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. The Role of Secretory Pathways inJournal of fungi (Basel, Switzerland) · 2020
    Review
  13. Article
  14. CRISPR-Based Genetic Manipulation ofFrontiers in genome editing · 2020
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Julia OhDepartment of Genetics, Stanford University, Palo Alto, California, United States of America.
Eula Fung
Ulrich Schlecht
Ronald W Davis
Guri Giaever
Robert P St Onge
Adam Deutschbauer
Corey Nislow

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI HOWE, ROGER THOMAS, JI, HANLEE P · 1990 to 2016
$120.9M
INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Technology to Identify and Assay Chemical Genomic ProbesR01HG003317 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE · 2004 to 2012
$9.1M
A NEW ES CELL DELETION RESOURCE AND WILLIAMS SYNDROMEF32HG000205 · NHGRI · JACKSON LABORATORY · PI GOODWIN, NEAL C · 1999 to 1999
–
CGH CDC HHS P01 GH000205CIHR MOP-81340CIHR MOP-84305NHGRI NIH HHS F32 HG000205NHGRI NIH HHS HG000205NHGRI NIH HHS P01 HG000205NHGRI NIH HHS R01 HG003317NHGRI NIH HHS T32 HG000044NHGRI NIH HHS T32 HG00044
6 · The paper itself

Abstract

Candida albicans is the most common human fungal pathogen, causing infections that can be lethal in immunocompromised patients. Although Saccharomyces cerevisiae has been used as a model for C. albicans, it lacks C. albicans' diverse morphogenic forms and is primarily non-pathogenic. Comprehensive genetic analyses that have been instrumental for determining gene function in S. cerevisiae are hampered in C. albicans, due in part to limited resources to systematically assay phenotypes of loss-of-function alleles. Here, we constructed and screened a library of 3633 tagged heterozygous transposon disruption mutants, using them in a competitive growth assay to examine nutrient- and drug-dependent haploinsufficiency. We identified 269 genes that were haploinsufficient in four growth conditions, the majority of which were condition-specific. These screens identified two new genes necessary for filamentous growth as well as ten genes that function in essential processes. We also screened 57 chemically diverse compounds that more potently inhibited growth of C. albicans versus S. cerevisiae. For four of these compounds, we examined the genetic basis of this differential inhibition. Notably, Sec7p was identified as the target of brefeldin A in C. albicans screens, while S. cerevisiae screens with this compound failed to identify this target. We also uncovered a new C. albicans-specific target, Tfp1p, for the synthetic compound 0136-0228. These results highlight the value of haploinsufficiency screens directly in this pathogen for gene annotation and drug target identification.

Indexed as

DNA Transposable ElementsOrganisms, Genetically ModifiedCandida albicansDrug DiscoveryFoodGene Expression ProfilingGenomic LibraryHaploinsufficiencyMicroarray AnalysisModels, BiologicalMolecular Sequence AnnotationMolecular Targeted TherapyMutagenesis, InsertionalSequence Tagged SitesDNA Transposable Elements

Identifiers

PMID20949076
PMCPMC2951378

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.