Evidence map›Paper›PMID 20947024›Full record

ArticleStructure (London, England : 1993)2010

Structural insights into RNA recognition by the alternate-splicing regulator CUG-binding protein 1.

Marianna Teplova, Jikui Song, Hai Yan Gaw, Alexei Teplov, Dinshaw J Patel

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 75 citations in OpenAlex.

  1. Pooled it
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  17. Z-DNA and Z-RNA in human disease.Communications biology · 2019
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Marianna TeplovaStructural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10021, USA.
Jikui Song
Hai Yan Gaw
Alexei Teplov
Dinshaw J Patel
Memorial Sloan Kettering Cancer Center · US

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
TUMORIGENIC DNA DAMAGE AND PEPTIDE-RNA RECOGNITIONR01CA049982 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI PATEL, DINSHAW J · 1990 to 2008
$2.6M
NCI NIH HHS CA049882NCI NIH HHS R01 CA049982NIBIB NIH HHS P30 EB009998
6 · The paper itself

Abstract

CUG-binding protein 1 (CUGBP1) regulates multiple aspects of nuclear and cytoplasmic mRNA processing, with implications for onset of myotonic dystrophy. CUGBP1 harbors three RRM domains and preferentially targets UGU-rich mRNA elements. We describe crystal structures of CUGBP1 RRM1 and tandem RRM1/2 domains bound to RNAs containing tandem UGU(U/G) elements. Both RRM1 in RRM1-RNA and RRM2 in RRM1/2-RNA complexes use similar principles to target UGU(U/G) elements, with recognition mediated by face-to-edge stacking and water-mediated hydrogen-bonding networks. The UG step adopts a left-handed Z-RNA conformation, with the syn guanine recognized through Hoogsteen edge-protein backbone hydrogen-bonding interactions. NMR studies on the RRM1/2-RNA complex establish that both RRM domains target tandem UGUU motifs in solution, whereas filter-binding assays identify a preference for recognition of GU over AU or GC steps. We discuss the implications of CUGBP1-mediated targeting and sequestration of UGU(U/G) elements on pre-mRNA alternative-splicing regulation, translational regulation, and mRNA decay.

Indexed as

Protein Structure, TertiaryAmino Acid SequenceBase SequenceBinding, CompetitiveCELF1 ProteinCrystallography, X-RayHydrogen BondingMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataMyotonic DystrophyProtein BindingProtein Structure, SecondaryRNARNA-Binding ProteinsRNA PrecursorsCELF1 ProteinCELF1 protein, humanRNARNA-Binding ProteinsRNA Precursors

Identifiers

PMID20947024
PMCPMC3381513
OpenAlexW1997706129

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.