Evidence map›Paper›PMID 20947022›Full record

ArticleStructure (London, England : 1993)2010

Structural basis for ligand recognition and activation of RAGE.

Michael Koch, Seth Chitayat, Brian M Dattilo, Andre Schiefner, Joachim Diez, Walter J Chazin, Günter Fritz

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed, 1 pooled it
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 1 synthesis or guideline pooled it, 236 citations in OpenAlex.

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70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Michael KochDepartment of Biology, University of Konstanz, 78457 Konstanz, Germany.
Seth Chitayat
Brian M Dattilo
Andre Schiefner
Joachim Diez
Walter J Chazin
Günter Fritz
Vanderbilt University · USUniversity of Konstanz · DEPaul Scherrer Institute · CHTechnical University of Munich · DE

Funding

MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
S100 PROTEINS: STRUCTURAL BASIS OF FUNCTIONAL PROPERTIESR01GM062112 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 2000 to 2009
$2.1M
CIHRNIGMS NIH HHS R01 GM062112NIGMS NIH HHS R01 GM62112NIGMS NIH HHS T32 GM008320
6 · The paper itself

Abstract

The receptor for advanced glycation end products (RAGE) is a pattern recognition receptor involved in inflammatory processes and is associated with diabetic complications, tumor outgrowth, and neurodegenerative disorders. RAGE induces cellular signaling events upon binding of a variety of ligands, such as glycated proteins, amyloid-β, HMGB1, and S100 proteins. The X-ray crystal structure of the VC1 ligand-binding region of the human RAGE ectodomain was determined at 1.85 Å resolution. The VC1 ligand-binding surface was mapped onto the structure from titrations with S100B monitored by heteronuclear NMR spectroscopy. These NMR chemical shift perturbations were used as input for restrained docking calculations to generate a model for the VC1-S100B complex. Together, the arrangement of VC1 molecules in the crystal and complementary biochemical studies suggest a role for self-association in RAGE function. Our results enhance understanding of the functional outcomes of S100 protein binding to RAGE and provide insight into mechanistic models for how the receptor is activated.

Indexed as

LigandsProtein Structure, TertiaryAmino Acid SequenceAnimalsBinding SitesCrystallography, X-RayHumansHydrogen-Ion ConcentrationKineticsMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataNerve Growth FactorsProtein BindingProtein FoldingProtein Structure, SecondaryLigandsNerve Growth FactorsReceptor for Advanced Glycation End ProductsReceptors, ImmunologicS100B protein, humanS100 Calcium Binding Protein beta SubunitS100 Proteins

Identifiers

PMID20947022
PMCPMC4250094
OpenAlexW2041740456

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.