Evidence map›Paper›PMID 20946836›Full record

ArticleMethods in enzymology2010

Applying genetics and molecular biology to the study of the human pathogen Cryptococcus neoformans.

Cheryl D Chun, Hiten D Madhani

Abstract read
In one paragraph

Article in Methods in enzymology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 87 citations in OpenAlex.

  1. Pooled it
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  17. Unveiling new features of the human pathogenComputational and structural biotechnology journal · 2025
    Article
  18. Discovery of CONature microbiology · 2024
    Article
  19. mBio · 2024
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  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Cheryl D ChunUniversity of California, San Francisco, California, USA.
Hiten D Madhani
University of California, San Francisco · US

Funding

Regulation of Virulence of Cryptococcus neoformansR01AI096869 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MADHANI, HITEN D · 2012 to 2016
$1.9M
Systematic Genetic Analysis of Fungal VirulenceR01AI065519 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MADHANI, HITEN D · 2005 to 2009
$1.7M
NIAID NIH HHS R01 AI065519NIAID NIH HHS R01AI065519NIAID NIH HHS R01 AI096869
6 · The paper itself

Abstract

The basidiomycete yeast Crytococcus neoformans is a prominent human pathogen. It primarily infects immunocompromised individuals producing a meningoencephalitis that is lethal if untreated. Recent advances in its genetics and molecular biology have made it a model system for understanding both the Basidiomycota phylum and mechanisms of fungal pathogenesis. The relative ease of experimental manipulation coupled with the development of murine models for human disease allow for powerful studies in the mechanisms of virulence and host responses. This chapter introduces the organism and its life cycle and then provides detailed step-by-step protocols for culture, manipulation of the genome, analysis of nucleic acids and proteins, and assessment of virulence and expression of virulence factors.

Indexed as

AnimalsCryptococcus neoformansElectrophoresis, Polyacrylamide GelFungal ProteinsHumansMacrophagesMiceMolecular BiologyPolymerase Chain ReactionRabbitsRatsFungal Proteins

Identifiers

PMID20946836
PMCPMC3611884
OpenAlexW1551144904

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.