Evidence map›Paper›PMID 20944223›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2010

A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 Å resolution.

Qingping Xu, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Constantina Bakolitsa, Xiaohui Cai, Dennis Carlton, Connie Chen, Hsiu Ju Chiu, Michelle Chiu and 41 more

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

51 authors at 7 institutions in 1 country.

Qingping XuStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Polat Abdubek
Tamara Astakhova
Herbert L Axelrod
Constantina Bakolitsa
Xiaohui Cai
Dennis Carlton
Connie Chen
Hsiu Ju Chiu
Michelle Chiu
Thomas Clayton
Debanu Das
Marc C Deller
Lian Duan
Kyle Ellrott
Carol L Farr
Julie Feuerhelm
Joanna C Grant
Anna Grzechnik
Gye Won Han
Lukasz Jaroszewski
Kevin K Jin
Heath E Klock
Mark W Knuth
Piotr Kozbial
S Sri Krishna
Abhinav Kumar
David Marciano
Daniel McMullan
Mitchell D Miller
Andrew T Morse
Edward Nigoghossian
Amanda Nopakun
Linda Okach
Christina Puckett
Ron Reyes
Natasha Sefcovic
Henry J Tien
Christine B Trame
Henry van den Bedem
Dana Weekes
Tiffany Wooten
Andrew Yeh
Jiadong Zhou
Keith O Hodgson
John Wooley
Marc Andre Elsliger
Ashley M Deacon
Adam Godzik
Scott A Lesley
Ian A Wilson
Joint Center for Structural Genomics · USGenomics Institute of the Novartis Research Foundation · USSLAC National Accelerator Laboratory · USUniversity of California, San Diego · USScripps Research Institute · USStanford Synchrotron Radiation Lightsource · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Technology Evaluation CoreU54GM074898 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2005 to 2009
$50.6M
NIGMS NIH HHS U54 GM074898
6 · The paper itself

Abstract

BT1062 from Bacteroides thetaiotaomicron is a homolog of Mfa2 (PGN0288 or PG0179), which is a component of the minor fimbriae in Porphyromonas gingivalis. The crystal structure of BT1062 revealed a conserved fold that is widely adopted by fimbrial components.

Indexed as

Protein FoldingAmino Acid SequenceBacteroidesCrystallography, X-RayFimbriae, BacterialFimbriae ProteinsModels, MolecularMolecular Sequence DataProtein Structure, TertiarySequence AlignmentStructural Homology, ProteinFimbriae Proteins

Identifiers

PMID20944223
PMCPMC2954217
OpenAlexW2015639119

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.