Evidence map›Paper›PMID 20944221›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2010

The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function.

Debanu Das, Robert D Finn, Dennis Carlton, Mitchell D Miller, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Constantina Bakolitsa, Connie Chen, Hsiu Ju Chiu and 41 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

51 authors.

Debanu DasStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Robert D Finn
Dennis Carlton
Mitchell D Miller
Polat Abdubek
Tamara Astakhova
Herbert L Axelrod
Constantina Bakolitsa
Connie Chen
Hsiu Ju Chiu
Michelle Chiu
Thomas Clayton
Marc C Deller
Lian Duan
Kyle Ellrott
Dustin Ernst
Carol L Farr
Julie Feuerhelm
Joanna C Grant
Anna Grzechnik
Gye Won Han
Lukasz Jaroszewski
Kevin K Jin
Heath E Klock
Mark W Knuth
Piotr Kozbial
S Sri Krishna
Abhinav Kumar
David Marciano
Daniel McMullan
Andrew T Morse
Edward Nigoghossian
Amanda Nopakun
Linda Okach
Christina Puckett
Ron Reyes
Christopher L Rife
Natasha Sefcovic
Henry J Tien
Christine B Trame
Henry van den Bedem
Dana Weekes
Tiffany Wooten
Qingping Xu
Keith O Hodgson
John Wooley
Marc André Elsliger
Ashley M Deacon
Adam Godzik
Scott A Lesley
Ian A Wilson

Funding

Technology Evaluation CoreU54GM074898 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2005 to 2009
$50.6M
NIGMS NIH HHS U54 GM074898Wellcome TrustWellcome Trust WT077044/Z/05/Z
6 · The paper itself

Abstract

Proteins that contain the DUF2874 domain constitute a new Pfam family PF11396. Members of this family have predominantly been identified in microbes found in the human gut and oral cavity. The crystal structure of one member of this family, BVU2987 from Bacteroides vulgatus, has been determined, revealing a β-lactamase inhibitor protein-like structure with a tandem repeat of domains. Sequence analysis and structural comparisons reveal that BVU2987 and other DUF2874 proteins are related to β-lactamase inhibitor protein, PepSY and SmpA_OmlA proteins and hence are likely to function as inhibitory proteins.

Indexed as

Amino Acid SequenceBacteroidesConserved SequenceCrystallography, X-RayModels, MolecularMolecular Sequence DataPeriplasmic ProteinsProtein BindingProtein Structure, TertiarySequence AlignmentStructural Homology, ProteinPeriplasmic Proteins

Identifiers

PMID20944221
PMCPMC2954215

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.