Evidence map›Paper›PMID 20944214›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2010

Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.

Gye Won Han, Constantina Bakolitsa, Mitchell D Miller, Abhinav Kumar, Dennis Carlton, Rafael J Najmanovich, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Connie Chen and 36 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors.

Gye Won HanStanford Synchrotron Radiation ightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Constantina Bakolitsa
Mitchell D Miller
Abhinav Kumar
Dennis Carlton
Rafael J Najmanovich
Polat Abdubek
Tamara Astakhova
Herbert L Axelrod
Connie Chen
Hsiu Ju Chiu
Thomas Clayton
Debanu Das
Marc C Deller
Lian Duan
Dustin Ernst
Julie Feuerhelm
Joanna C Grant
Anna Grzechnik
Lukasz Jaroszewski
Kevin K Jin
Hope A Johnson
Heath E Klock
Mark W Knuth
Piotr Kozbial
S Sri Krishna
David Marciano
Daniel McMullan
Andrew T Morse
Edward Nigoghossian
Linda Okach
Ron Reyes
Christopher L Rife
Natasha Sefcovic
Henry J Tien
Christine B Trame
Henry van den Bedem
Dana Weekes
Qingping Xu
Keith O Hodgson
John Wooley
Marc André Elsliger
Ashley M Deacon
Adam Godzik
Scott A Lesley
Ian A Wilson

Funding

Technology Evaluation CoreU54GM074898 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2005 to 2009
$50.6M
NIGMS NIH HHS U54 GM074898
6 · The paper itself

Abstract

The crystal structures of SPO0140 and Sbal_2486 were determined using the semiautomated high-throughput pipeline of the Joint Center for Structural Genomics (JCSG) as part of the NIGMS Protein Structure Initiative (PSI). The structures revealed a conserved core with domain duplication and a superficial similarity of the C-terminal domain to pleckstrin homology-like folds. The conservation of the domain interface indicates a potential binding site that is likely to involve a nucleotide-based ligand, with genome-context and gene-fusion analyses additionally supporting a role for this family in signal transduction, possibly during oxidative stress.

Indexed as

Protein FoldingSignal TransductionAmino Acid SequenceBacterial ProteinsCrystallography, X-RayGenome, BacterialModels, MolecularMolecular Sequence DataProtein Structure, SecondaryProtein Structure, TertiaryRhodobacteraceaeShewanellaStructural Homology, ProteinBacterial Proteins

Identifiers

PMID20944214
PMCPMC2954208

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.