Evidence map›Paper›PMID 20944212›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2010

Structure of LP2179, the first representative of Pfam family PF08866, suggests a new fold with a role in amino-acid metabolism.

Constantina Bakolitsa, Abhinav Kumar, Dennis Carlton, Mitchell D Miller, S Sri Krishna, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Hsiu Ju Chiu, Thomas Clayton and 32 more

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 85% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors at 7 institutions in 1 country.

Constantina BakolitsaStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Abhinav Kumar
Dennis Carlton
Mitchell D Miller
S Sri Krishna
Polat Abdubek
Tamara Astakhova
Herbert L Axelrod
Hsiu Ju Chiu
Thomas Clayton
Marc C Deller
Lian Duan
Marc André Elsliger
Julie Feuerhelm
Slawomir K Grzechnik
Joanna C Grant
Gye Won Han
Lukasz Jaroszewski
Kevin K Jin
Heath E Klock
Mark W Knuth
Piotr Kozbial
David Marciano
Daniel McMullan
Andrew T Morse
Edward Nigoghossian
Linda Okach
Silvya Oommachen
Jessica Paulsen
Ron Reyes
Christopher L Rife
Henry J Tien
Christina V Trout
Henry van den Bedem
Dana Weekes
Qingping Xu
Keith O Hodgson
John Wooley
Ashley M Deacon
Adam Godzik
Scott A Lesley
Ian A Wilson
Joint Center for Structural Genomics · USScripps Research Institute · USGenomics Institute of the Novartis Research Foundation · USSLAC National Accelerator Laboratory · USStanford Synchrotron Radiation Lightsource · USUniversity of California, San Diego · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Technology Evaluation CoreU54GM074898 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2005 to 2009
$50.6M
JOINT CENTER FOR STRUCTURAL GENOMICSP50GM062411 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI WILSON, IAN A · 2000 to 2004
$32.9M
NCI NIH HHS Y1-CO-1020NIGMS NIH HHS P50 GM062411NIGMS NIH HHS P50 GM62411NIGMS NIH HHS U54 GM074898NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

The structure of LP2179, a member of the PF08866 (DUF1831) family, suggests a novel α+β fold comprising two β-sheets packed against a single helix. A remote structural similarity to two other uncharacterized protein families specific to the Bacillus genus (PF08868 and PF08968), as well as to prokaryotic S-adenosylmethionine decarboxylases, is consistent with a role in amino-acid metabolism. Genomic neighborhood analysis of LP2179 supports this functional assignment, which might also then be extended to PF08868 and PF08968.

Indexed as

Protein FoldingAmino AcidsAmino Acid SequenceBacterial ProteinsCrystallography, X-RayLactiplantibacillus plantarumModels, MolecularMolecular Sequence DataProtein Structure, TertiarySequence AlignmentStructural Homology, ProteinAmino AcidsBacterial Proteins

Identifiers

PMID20944212
PMCPMC2954206
OpenAlexW2134614805

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.