Evidence map›Paper›PMID 20944211›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2010

The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator.

Constantina Bakolitsa, Alex Bateman, Kevin K Jin, Daniel McMullan, S Sri Krishna, Mitchell D Miller, Polat Abdubek, Claire Acosta, Tamara Astakhova, Herbert L Axelrod and 42 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  3. Review
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

52 authors.

Constantina BakolitsaStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Alex Bateman
Kevin K Jin
Daniel McMullan
S Sri Krishna
Mitchell D Miller
Polat Abdubek
Claire Acosta
Tamara Astakhova
Herbert L Axelrod
Prasad Burra
Dennis Carlton
Hsiu Ju Chiu
Thomas Clayton
Debanu Das
Marc C Deller
Lian Duan
Ylva Elias
Julie Feuerhelm
Joanna C Grant
Anna Grzechnik
Slawomir K Grzechnik
Gye Won Han
Lukasz Jaroszewski
Heath E Klock
Mark W Knuth
Piotr Kozbial
Abhinav Kumar
David Marciano
Andrew T Morse
Kevin D Murphy
Edward Nigoghossian
Linda Okach
Silvya Oommachen
Jessica Paulsen
Ron Reyes
Christopher L Rife
Natasha Sefcovic
Henry Tien
Christine B Trame
Christina V Trout
Henry van den Bedem
Dana Weekes
Aprilfawn White
Qingping Xu
Keith O Hodgson
John Wooley
Marc André Elsliger
Ashley M Deacon
Adam Godzik
Scott Lesley
Ian A Wilson

Funding

Technology Evaluation CoreU54GM074898 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2005 to 2009
$50.6M
JOINT CENTER FOR STRUCTURAL GENOMICSP50GM062411 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI WILSON, IAN A · 2000 to 2004
$32.9M
NIGMS NIH HHS P50 GM062411NIGMS NIH HHS P50 GM62411NIGMS NIH HHS U54 GM074898Wellcome Trust 087656Wellcome Trust WT077044/Z/05/Z
6 · The paper itself

Abstract

The crystal structure of Jann_2411 from Jannaschia sp. strain CCS1, a member of the Pfam PF07336 family classified as a domain of unknown function (DUF1470), was solved to a resolution of 1.45 Å by multiple-wavelength anomalous dispersion (MAD). This protein is the first structural representative of the DUF1470 Pfam family. Structural analysis revealed a two-domain organization, with the N-terminal domain presenting a new fold called the ABATE domain that may bind an as yet unknown ligand. The C-terminal domain forms a treble-clef zinc finger that is likely to be involved in DNA binding. Analysis of the Jann_2411 protein and the broader ABATE-domain family suggests a role as stress-induced transcriptional regulators.

Indexed as

Amino Acid SequenceBacterial ProteinsCrystallography, X-RayModels, MolecularMolecular Sequence DataProtein Structure, QuaternaryProtein Structure, TertiaryRhodobacteraceaeSequence AlignmentZinc FingersBacterial Proteins

Identifiers

PMID20944211
PMCPMC2954205

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.