ArticleActa crystallographica. Section F, Structural biology and crystallization communications2010
TOPSAN: use of a collaborative environment for annotating, analyzing and disseminating data on JCSG and PSI structures.
Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed.
- Protein structure annotation resources.Methods in molecular biology (Clifton, N.J.) · 2015Review
- A distinct MaoC-like enoyl-CoA hydratase architecture mediates cholesterol catabolism in Mycobacterium tuberculosis.ACS chemical biology · 2014Article
- Structural analysis of arabinose-5-phosphate isomerase from Bacteroides fragilis and functional implications.Acta crystallographica. Section D, Biological crystallography · 2014Article
- Molecular characterization of novel pyridoxal-5'-phosphate-dependent enzymes from the human microbiome.Protein science : a publication of the Protein Society · 2014Article
- The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource.Journal of structural and functional genomics · 2012Article
- Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012.Standards in genomic sciences · 2012Article
- The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu.Protein science : a publication of the Protein Society · 2010Article
- The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- Structure of LP2179, the first representative of Pfam family PF08866, suggests a new fold with a role in amino-acid metabolism.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- The structure of the first representative of Pfam family PF06475 reveals a new fold with possible involvement in glycolipid metabolism.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- Structure of an essential bacterial protein YeaZ (TM0874) from Thermotoga maritima at 2.5 Å resolution.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- The structure of KPN03535 (gi|152972051), a novel putative lipoprotein from Klebsiella pneumoniae, reveals an OB-fold.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 Å resolution.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- Structure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- Ligands in PSI structures.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
- Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010Article
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7 authors.
Funding
Abstract
The NIH Protein Structure Initiative centers, such as the Joint Center for Structural Genomics (JCSG), have developed highly efficient technological platforms that are capable of experimentally determining the three-dimensional structures of hundreds of proteins per year. However, the overwhelming majority of the almost 5000 protein structures determined by these centers have yet to be described in the peer-reviewed literature. In a high-throughput structural genomics environment, the process of structure determination occurs independently of any associated experimental characterization of function, which creates a challenge for the annotation and analysis of structures and the publication of these results. This challenge has been addressed by developing TOPSAN (`The Open Protein Structure Annotation Network'), which enables the generation of knowledge via collaborations among globally distributed contributors supported by automated amalgamation of available information. TOPSAN currently provides annotations for all protein structures determined by the JCSG in addition to preliminary annotations on a large number of structures from the other PSI production centers. TOPSAN-enabled collaborations have resulted in insightful structure-function analysis for many proteins and have led to numerous peer-reviewed publications, as exemplified by the articles included in this issue of Acta Crystallographica Section F.
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