Evidence map›Paper›PMID 20944015›Full record

ArticleGenetics2011

Overlapping regulation of CenH3 localization and histone H3 turnover by CAF-1 and HIR proteins in Saccharomyces cerevisiae.

Jessica Lopes da Rosa, John Holik, Erin M Green, Oliver J Rando, Paul D Kaufman

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 52 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jessica Lopes da RosaDepartment of Molecular and Cell Biology, University of California, Berkeley, California 947202, USA.
John Holik
Erin M Green
Oliver J Rando
Paul D Kaufman
University of Massachusetts Chan Medical School · USUniversity of California, Berkeley · US

Funding

Regulation of repetitive chromatin structures during the human cell cycleR01GM055712 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI KAUFMAN, PAUL D. · 1997 to 2014
$5.1M
Genomic analysis of histone replacement dynamics in yeastR01GM079205 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RANDO, OLIVER J · 2008 to 2016
$3.3M
Small molecule inhibitors of a Candida albicans histone modifying enzymeF31AI078726 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LOPES DA ROSA-SPIEGLER, JESSICA RAMOS · 2009 to 2012
$94k
NIAID NIH HHS F31 AI 078726NIAID NIH HHS F31 AI078726NIGMS NIH HHS R01 GM055712NIGMS NIH HHS R01 GM079205NIGMS NIH HHS R01 GM55712
6 · The paper itself

Abstract

Accurate chromosome segregation is dependent on the centromere-specific histone H3 isoform known generally as CenH3, or as Cse4 in budding yeast. Cytological experiments have shown that Cse4 appears at extracentromeric loci in yeast cells deficient for both the CAF-1 and HIR histone H3/H4 deposition complexes, consistent with increased nondisjunction in these double mutant cells. Here, we examined molecular aspects of this Cse4 mislocalization. Genome-scale chromatin immunoprecipitation analyses demonstrated broader distribution of Cse4 outside of centromeres in cac1Δ hir1Δ double mutant cells that lack both CAF-1 and HIR complexes than in either single mutant. However, cytological localization showed that the essential inner kinetochore component Mif2 (CENP-C) was not recruited to extracentromeric Cse4 in cac1Δ hir1Δ double mutant cells. We also observed that rpb1-1 mutants displayed a modestly increased Cse4 half-life at nonpermissive temperatures, suggesting that turnover of Cse4 is partially dependent on Pol II transcription. We used genome-scale assays to demonstrate that the CAF-1 and HIR complexes independently stimulate replication-independent histone H3 turnover rates. We discuss ways in which altered histone exchange kinetics may affect eviction of Cse4 from noncentromeric loci.

Indexed as

AnimalsCell SurvivalCentromereChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneDNA-Binding ProteinsEnzyme ActivationGenomicsHalf-LifeHistonesHumansKinetochoresMutationNuclear ProteinsProtein StabilityProtein TransportChromosomal Proteins, Non-HistoneCSE4 protein, S cerevisiaeDNA-Binding ProteinsHIR1 protein, S cerevisiaeHistonesNuclear ProteinsPOP2 protein, S cerevisiaeRepressor ProteinsRibonucleasesRNA Polymerase IISaccharomyces cerevisiae Proteins

Identifiers

PMID20944015
PMCPMC3018296
OpenAlexW2164308255

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.