Evidence map›Paper›PMID 20943968›Full record

ArticleJournal of virology2010

Identification of basic amino acids at the N-terminal end of the core protein that are crucial for hepatitis C virus infectivity.

Khaled Alsaleh, Pierre-Yves Delavalle, André Pillez, Gilles Duverlie, Véronique Descamps, Yves Rouillé, Jean Dubuisson, Czeslaw Wychowski

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Khaled AlsalehINSERM U1019, CNRS UMR 8204, Center for Infection and Immunity of Lille, Institut de Biologie de Lille, F-59021 Lille, France.
Pierre-Yves Delavalle
André Pillez
Gilles Duverlie
Véronique Descamps
Yves Rouillé
Jean Dubuisson
Czeslaw Wychowski
Centre National de la Recherche Scientifique · FRInstitut de Biologie de Lille · FRLaboratoire Amiénois de Mathématique Fondamentale et Appliquée · FRInserm · FRInstitut Pasteur de Lille · FR

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

A major function of the hepatitis C virus (HCV) core protein is the interaction with genomic RNA to form the nucleocapsid, an essential component of the virus particle. Analyses to identify basic amino acid residues of HCV core protein, important for capsid assembly, were initially performed with a cell-free system, which did not indicate the importance of these residues for HCV infectivity. The development of a cell culture system for HCV (HCVcc) allows a more precise analysis of these core protein amino acids during the HCV life cycle. In the present study, we used a mutational analysis in the context of the HCVcc system to determine the role of the basic amino acid residues of the core protein in HCV infectivity. We focused our analysis on basic residues located in two clusters (cluster 1, amino acids [aa]6 to 23; cluster 2, aa 39 to 62) within the N-terminal 62 amino acids of the HCV core protein. Our data indicate that basic residues of the first cluster have little impact on replication and are dispensable for infectivity. Furthermore, only four basic amino acids residues of the second cluster (R50, K51, R59, and R62) were essential for the production of infectious viral particles. Mutation of these residues did not interfere with core protein subcellular localization, core protein-RNA interaction, or core protein oligomerization. Moreover, these mutations had no effect on core protein envelopment by intracellular membranes. Together, these data indicate that R50, K51, R59, and R62 residues play a major role in the formation of infectious viral particles at a post-nucleocapsid assembly step.

Indexed as

Virus ReplicationAmino Acids, BasicAmino Acid SequenceBase SequenceBlotting, WesternCarcinoma, HepatocellularFluorescent Antibody TechniqueHepacivirusHumansLiver NeoplasmsMolecular Sequence DataMutagenesis, Site-DirectedMutationNucleic Acid ConformationRNA, ViralTranscription, GeneticAmino Acids, Basicnucleocapsid protein, Hepatitis C virusRNA, ViralViral Core Proteins

Identifiers

PMID20943968
PMCPMC3004332
OpenAlexW2051108527

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.