Evidence map›Paper›PMID 20943813›Full record

ArticleMolecular endocrinology (Baltimore, Md.)2010

Research resource: Genome-wide mapping of in vivo androgen receptor binding sites in mouse epididymis.

Shuanggang Hu, Guangxin Yao, Xiaojun Guan, Zimei Ni, Wubin Ma, Elizabeth M Wilson, Frank S French, Qiang Liu, Yonglian Zhang

Open access · greenAbstract read
In one paragraph

Article in Molecular endocrinology (Baltimore, Md.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 59 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
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  5. Review
  6. Article
  7. Article
  8. Review
  9. Androgen and estrogen sensitivity of bird song: a comparative view on gene regulatory levels.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Androgenic regulation of beta-defensins in the mouse epididymis.Reproductive biology and endocrinology : RB&E · 2014
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Shuanggang HuShanghai Key Laboratory for Molecular Andrology, State Key Laboratory of Molecular Biology, Shanghai Institutes for Biological Sciences, The Graduate School, Chinese Academy of Sciences, Shanghai, China.
Guangxin Yao
Xiaojun Guan
Zimei Ni
Wubin Ma
Elizabeth M Wilson
Frank S French
Qiang Liu
Yonglian Zhang
University of North Carolina at Chapel Hill · USChinese Academy of Sciences · CNShanghai Institute of Planned Parenthood Research · CNShanghai Institutes for Biological Sciences · CNShenyang Pharmaceutical University · CN

Funding

INTERNAT'L TRAINING/RESEARCH--CONTRACEPTIVE DEVELOPMENTD43TW000627 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FRENCH, FRANK S · 1995 to 2010
$2.2M
FIC NIH HHS 2 D43 TW000627-11FIC NIH HHS D43 TW000627
6 · The paper itself

Abstract

Epididymal function depends on androgen signaling through the androgen receptor (AR), although most of the direct AR target genes in epididymis remain unknown. Here we globally mapped the AR binding regions in mouse caput epididymis in which AR is highly expressed. Chromatin immunoprecipitation sequencing indicated that AR bound selectively to 19,377 DNA regions, the majority of which were intergenic and intronic. Motif analysis showed that 94% of the AR binding regions harbored consensus androgen response elements enriched with multiple binding motifs that included nuclear factor 1 and activator protein 2 sites consistent with combinatorial regulation. Unexpectedly, AR binding regions showed limited conservation across species, regardless of whether the metric for conservation was based on local sequence similarity or the presence of consensus androgen response elements. Further analysis suggested the AR target genes are involved in diverse biological themes that include lipid metabolism and sperm maturation. Potential novel mechanisms of AR regulation were revealed at individual genes such as cysteine-rich secretory protein 1. The composite studies provide new insights into AR regulation under physiological conditions and a global resource of AR binding sites in a normal androgen-responsive tissue.

Indexed as

Chromosome MappingAnimalsConserved SequenceEpididymisEvolution, MolecularGene ExpressionGenital Diseases, MaleHumansLipid MetabolismMaleMembrane GlycoproteinsMiceMolecular Sequence DataNFI Transcription FactorsProtein BindingReceptors, AndrogenCRISP1 protein, humanMembrane GlycoproteinsNFI Transcription FactorsReceptors, AndrogenTranscription Factor AP-2Transcription Factors

Identifiers

PMID20943813
PMCPMC2999474
OpenAlexW2110863672

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.