Evidence map›Paper›PMID 20940301›Full record

ArticleThe Journal of biological chemistry2010

Rod phosphodiesterase-6 PDE6A and PDE6B subunits are enzymatically equivalent.

Hakim Muradov, Kimberly K Boyd, Nikolai O Artemyev

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 53 citations in OpenAlex.

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  13. Elementary response triggered by transducin in retinal rods.Proceedings of the National Academy of Sciences of the United States of America · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Hakim MuradovDepartment of Molecular Physiology and Biophysics, University of Iowa, Iowa City, Iowa 52242, USA.
Kimberly K Boyd
Nikolai O Artemyev
University of Iowa · US

Funding

REGULATION OF ROD CYCLIC GMP PHOSPHODIESTERASER01EY010843 · NEI · UNIVERSITY OF IOWA · PI Nikolai O Artemyev · 1995 to 2026
$8.9M
MOLECULAR MECHANISM OF PHOTORECEPTOR G PROTEIN SIGNALINGR01EY012682 · NEI · UNIVERSITY OF IOWA · PI ARTEMYEV, NIKOLAI O · 2000 to 2022
$7.5M
NEI NIH HHS EY-10843NEI NIH HHS EY-12682NEI NIH HHS R01 EY010843NEI NIH HHS R01 EY012682
6 · The paper itself

Abstract

Phosphodiesterase-6 (PDE6) is the key effector enzyme of the phototransduction cascade in rods and cones. The catalytic core of rod PDE6 is a unique heterodimer of PDE6A and PDE6B catalytic subunits. The functional significance of rod PDE6 heterodimerization and conserved differences between PDE6AB and cone PDE6C and the individual properties of PDE6A and PDE6B are unknown. To address these outstanding questions, we expressed chimeric homodimeric enzymes, enhanced GFP (EGFP)-PDE6C-A and EGFP-PDE6C-B, containing the PDE6A and PDE6B catalytic domains, respectively, in transgenic Xenopus laevis. Similar to EGFP-PDE6C, EGFP-PDE6C-A and EGFP-PDE6C-B were targeted to the rod outer segments and concentrated at the disc rims. PDE6C, PDE6C-A, and PDE6C-B were isolated following selective immunoprecipitation of the EGFP fusion proteins. All three enzymes, PDE6C, PDE6C-A, and PDE6C-B, hydrolyzed cGMP with similar K(m) (20-23 μM) and k(cat) (4200-5100 s(-1)) values. Likewise, the K(i) values for PDE6C, PDE6C-A, and PDE6C-B inhibition by the cone- and rod-specific PDE6 γ-subunits (Pγ) were comparable. Recombinant cone transducin-α (Gα(t2)) and native rod Gα(t1) fully and potently activated PDE6C, PDE6C-A, and PDE6C-B. In contrast, the half-maximal activation of bovine rod PDE6 required markedly higher concentrations of Gα(t2) or Gα(t1). Our results suggest that PDE6A and PDE6B are enzymatically equivalent. Furthermore, PDE6A and PDE6B are similar to PDE6C with respect to catalytic properties and the interaction with Pγ but differ in the interaction with transducin. This study significantly limits the range of mechanisms by which conserved differences between PDE6A, PDE6B, and PDE6C may contribute to remarkable differences in rod and cone physiology.

Indexed as

AnimalsAnimals, Genetically ModifiedCatalytic DomainCattleCell LineCyclic Nucleotide Phosphodiesterases, Type 6Enzyme ActivationEye ProteinsHeterotrimeric GTP-Binding ProteinsHumansRecombinant Fusion ProteinsRetinal Cone Photoreceptor CellsRetinal Rod Photoreceptor CellsTransducinXenopus laevisCyclic Nucleotide Phosphodiesterases, Type 6Eye ProteinsGNAT1 protein, humanHeterotrimeric GTP-Binding ProteinsPDE6A protein, humanPDE6B protein, humanPDE6C protein, humanRecombinant Fusion ProteinsTransducin

Identifiers

PMID20940301
PMCPMC3000964
OpenAlexW2057961484

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.