ArticleFunctional & integrative genomics2011
Alkaline-stress response in Glycine soja leaf identifies specific transcription factors and ABA-mediated signaling factors.
Article in Functional & integrative genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 40 citations in OpenAlex.
- Genome-Wide Analysis ofPlants (Basel, Switzerland) · 2026Article
- Transcriptome analysis of fenugreek under mixed saline-alkali stress.Frontiers in plant science · 2026Article
- Article
- GsPKS24, a calcineurin B-like protein-interacting protein kinase gene from Glycine soja, positively regulates tolerance to pH stress and ABA signal transduction.Functional & integrative genomics · 2023Article
- Transcriptome Analysis of Bread Wheat Genotype KRL3-4 Provides a New Insight Into Regulatory Mechanisms Associated With Sodicity (High pH) Tolerance.Frontiers in genetics · 2021Article
- Integrated Physiological and Transcriptomic Analyses Responses to Altitude Stress in Oat (Frontiers in genetics · 2021Article
- Application of compound material alleviates saline and alkaline stress in cotton leaves through regulation of the transcriptome.BMC plant biology · 2020Article
- Comprehensive mapping of abiotic stress inputs into the soybean circadian clock.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- Transcriptome profiling reveals the genetic basis of alkalinity tolerance in wheat.BMC genomics · 2017Article
- Transcriptome analysis of genes involved in defense against alkaline stress in roots of wild jujube (Ziziphus acidojujuba).PloS one · 2017Article
- Identification and Analysis of NaHCOFrontiers in plant science · 2016Article
- Wild soybean roots depend on specific transcription factors and oxidation reduction related genesin response to alkaline stress.Functional & integrative genomics · 2015Article
- Comprehensive analysis of differentially expressed genes and transcriptional regulation induced by salt stress in two contrasting cotton genotypes.BMC genomics · 2014Article
- Article
- Comprehensive transcriptional profiling of NaHCOPlant molecular biology · 2013Article
- Identification of wild soybean (Glycine soja) TIFY family genes and their expression profiling analysis under bicarbonate stress.Plant cell reports · 2013Article
- Identification of hub genes related to the recovery phase of irradiation injury by microarray and integrated gene network analysis.PloS one · 2011Article
Corrections and comments
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Transcriptome of Glycine soja leaf tissue during a detailed time course formed a foundation for examining transcriptional processes during NaHCO(3) stress treatment. Of a total of 2,310 detected differentially expressed genes, 1,664 genes were upregulated and 1,704 genes were downregulated at various time points. The number of stress-regulated genes increased dramatically after a 6-h stress treatment. GO category gene enrichment analysis revealed that most of the differentially expressed genes were involved in cell structure, protein synthesis, energy, and secondary metabolism. Another enrichment test revealed that the response of G. soja to NaHCO(3) highlights specific transcription factors, such as the C2C2-CO-like, MYB-related, WRKY, GARP-G2-like, and ZIM families. Co-expressed genes were clustered into ten classes (P < 0.001). Intriguingly, one cluster of 188 genes displayed a unique expression pattern that increases at an early stage (0.5 and 3 h), followed by a decrease from 6 to 12 h. This group was enriched in regulation of transcription components, including AP2-EREBP, bHLH, MYB/MYB-related, C2C2-CO-like, C2C2-DOF, C2C2, C3H, and GARP-G2-like transcription factors. Analysis of the 1-kb upstream regions of transcripts displaying similar changes in abundance identified 19 conserved motifs, potential binding sites for transcription factors. The appearance of ABA-responsive elements in the upstream of co-expression genes reveals that ABA-mediated signaling participates in the signal transduction in alkaline response.
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