Evidence map›Paper›PMID 20937785›Full record

ArticleAntimicrobial agents and chemotherapy2011

Structural and biochemical analysis of the pentapeptide repeat protein EfsQnr, a potent DNA gyrase inhibitor.

Subray S Hegde, Matthew W Vetting, Lesley A Mitchenall, Anthony Maxwell, John S Blanchard

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. The pentapeptide-repeat protein, MfpA, interacts with mycobacterial DNA gyrase as a DNA T-segment mimic.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Article
  6. Overexpression ofInternational journal of microbiology · 2021
    Article
  7. Review
  8. Review
  9. Article
  10. Topoisomerases as anticancer targets.The Biochemical journal · 2018
    Review
  11. Review
  12. Article
  13. Article
  14. Mechanisms of drug resistance: quinolone resistance.Annals of the New York Academy of Sciences · 2015
    Review
  15. DNA Topoisomerases.EcoSal Plus · 2015
    Review
  16. Plasmid-mediated quinolone resistance.Microbiology spectrum · 2014
    Review
  17. QnrS1 structure-activity relationships.The Journal of antimicrobial chemotherapy · 2014
    Article
  18. Functional verification of computationally predicted qnr genes.Annals of clinical microbiology and antimicrobials · 2013
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Subray S HegdeDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Matthew W Vetting
Lesley A Mitchenall
Anthony Maxwell
John S Blanchard
Albert Einstein College of Medicine · USJohn Innes Centre · GB

Funding

MECHANISMS BASED INHIBITION OF M TUBERCULOSIS ENZYMESR01AI033696 · NIAID · YESHIVA UNIVERSITY · PI BLANCHARD, JOHN S · 1992 to 2012
$7.7M
Biotechnology and Biological Sciences Research Council BBS/E/J/00000201NIAID NIH HHS AI33696NIAID NIH HHS R01 AI033696
6 · The paper itself

Abstract

The chromosomally encoded Qnr homolog protein from Enterococcus faecalis (EfsQnr), when expressed, confers to its host a decreased susceptibility to quinolones and consists mainly of tandem repeats, which is consistent with belonging to the pentapeptide repeat family of proteins (PRPs). EfsQnr was cloned with an N-terminal 6× His tag and purified to homogeneity. EfsQnr partially protected DNA gyrase from fluoroquinolone inhibition at concentrations as low as 20 nM. EfsQnr inhibited the ATP-dependent supercoiling activity of DNA gyrase with a 50% inhibitory concentration (IC(50)) of 1.2 μM, while no significant inhibition of ATP-independent relaxation activity was observed. EfsQnr was cytotoxic when overexpressed in Escherichia coli, resulting in the clumping of cells and a loss of viability. The X-ray crystal structure of EfsQnr was determined to 1.6-Å resolution. EfsQnr exhibits the right-handed quadrilateral beta-helical fold typical of PRPs, with features more analogous to MfpA (mycobacterium fluoroquinolone resistance pentapeptide) than to the PRPs commonly found in cyanobacteria.

Indexed as

Topoisomerase II InhibitorsAmino Acid SequenceBacterial ProteinsEnterococcus faecalisEscherichia coliMicrobial ViabilityMicroscopy, Electron, ScanningMolecular Sequence DataProtein MultimerizationProtein Structure, SecondarySequence Homology, Amino AcidBacterial ProteinsTopoisomerase II Inhibitors

Identifiers

PMID20937785
PMCPMC3019687
OpenAlexW2159555598

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.