Evidence map›Paper›PMID 20936779›Full record

ArticleNature methods2010

A human MAP kinase interactome.

Sourav Bandyopadhyay, Chih-yuan Chiang, Jyoti Srivastava, Merril Gersten, Suhaila White, Russell Bell, Cornelia Kurschner, Christopher H Martin, Mike Smoot, Sudhir Sahasrabudhe and 3 more

Abstract read
In one paragraph

Article in Nature methods, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed.

  1. Article
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  3. ISR Modulators in Neurological Diseases.Current neuropharmacology · 2025
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  10. The Remaining Conundrum of the Role of the NaReviews in cardiovascular medicine · 2022
    Review
  11. Article
  12. Article
  13. Role of Genetic Mutations of the NaMolecular and cellular biochemistry · 2021
    Review
  14. Article
  15. Article
  16. Structural and Functional Changes in the NaInternational journal of molecular sciences · 2019
    Review
  17. Article
  18. Article
  19. Review
  20. Article

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Sourav BandyopadhyayDepartments of Medicine and Bioengineering, University of California at San Diego, La Jolla, California, USA.
Chih-yuan Chiang
Jyoti Srivastava
Merril Gersten
Suhaila White
Russell Bell
Cornelia Kurschner
Christopher H Martin
Mike Smoot
Sudhir Sahasrabudhe
Diane L Barber
Sumit K Chanda
Trey Ideker

Funding

Therapeutics Core (Page 286)P30MH062261 · NIMH · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI GENDELMAN, HOWARD E · 2000 to 2021
$37.7M
SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
Cytoscape: A Modeling Platform for Biomolecular NetworksR01GM070743 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2004 to 2016
$5.7M
MECHANISMS OF RECEPTOR-REGULATED NA+/H+ EXCHANGER01GM047413 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BARBER, DIANE L · 1993 to 2014
$4.2M
NIGMS NIH HHS P50 GM085764NIGMS NIH HHS R01 GM047413NIGMS NIH HHS R01 GM070743NIGMS NIH HHS R01-GM070743NIGMS NIH HHS R01-GM47413NIMH NIH HHS P30 MH062261NIMH NIH HHS P30-MH062261
6 · The paper itself

Abstract

Mitogen-activated protein kinase (MAPK) pathways form the backbone of signal transduction in the mammalian cell. Here we applied a systematic experimental and computational approach to map 2,269 interactions between human MAPK-related proteins and other cellular machinery and to assemble these data into functional modules. Multiple lines of evidence including conservation with yeast supported a core network of 641 interactions. Using small interfering RNA knockdowns, we observed that approximately one-third of MAPK-interacting proteins modulated MAPK-mediated signaling. We uncovered the Na-H exchanger NHE1 as a potential MAPK scaffold, found links between HSP90 chaperones and MAPK pathways and identified MUC12 as the human analog to the yeast signaling mucin Msb2. This study makes available a large resource of MAPK interactions and clone libraries, and it illustrates a methodology for probing signaling networks based on functional refinement of experimentally derived protein-interaction maps.

Indexed as

Base SequenceCation Transport ProteinsCell LineCell MembraneCloning, MolecularDNA, ComplementaryHSP90 Heat-Shock ProteinsHumansIntracellular Signaling Peptides and ProteinsLuciferasesMAP Kinase Signaling SystemMitogen-Activated Protein KinasesMolecular Sequence DataMucinsNF-kappa BProteomicsCation Transport ProteinsDNA, ComplementaryHSP90 Heat-Shock ProteinsIntracellular Signaling Peptides and ProteinsLuciferasesMitogen-Activated Protein KinasesMSB2 protein, S cerevisiaeMucinsNF-kappa BRNA, Small InterferingSaccharomyces cerevisiae ProteinsSLC9A1 protein, humanSodium-Hydrogen Exchanger 1Sodium-Hydrogen ExchangersTranscription Factor AP-1

Identifiers

PMID20936779
PMCPMC2967489

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.