Evidence map›Paper›PMID 20935055›Full record

ArticleNucleic acids research2011

EMDataBank.org: unified data resource for CryoEM.

Catherine L Lawson, Matthew L Baker, Christoph Best, Chunxiao Bi, Matthew Dougherty, Powei Feng, Glen van Ginkel, Batsal Devkota, Ingvar Lagerstedt, Steven J Ludtke and 12 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 143 papers.

0numbers the graph read from it
0cells of the map it votes in
143citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

143 citing papers in PubMed.

  1. Article
  2. Review
  3. Cryogenic Electron Microscopy of Rift Valley Fever Virus.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. EMDB-the Electron Microscopy Data Bank.Nucleic acids research · 2024
    Review
  9. Mass spectrometers as cryoEM grid preparation instruments.Current opinion in structural biology · 2023
    Review
  10. High-throughput cryo-ET structural pattern mining by unsupervised deep iterative subtomogram clustering.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Spatial arrangement of proteins in planar and curved membranes by PPM 3.0.Protein science : a publication of the Protein Society · 2022
    Article
  19. Article
  20. Article

83 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Catherine L LawsonDepartment of Chemistry and Chemical Biology and Research Collaboratory for Structural Bioinformatics, Rutgers, The State University of New Jersey, 610 Taylor Road Piscataway, NJ 08854, USA. cathy.lawson@rutgers.edu
Matthew L Baker
Christoph Best
Chunxiao Bi
Matthew Dougherty
Powei Feng
Glen van Ginkel
Batsal Devkota
Ingvar Lagerstedt
Steven J Ludtke
Richard H Newman
Tom J Oldfield
Ian Rees
Gaurav Sahni
Raul Sala
Sameer Velankar
Joe Warren
John D Westbrook
Kim Henrick
Gerard J Kleywegt
Helen M Berman
Wah Chiu

Funding

Unified Data Resource for Large Complexes Determined by Cryo-Electron MicroscopyR01GM079429 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2007 to 2021
$11.6M
Biotechnology and Biological Sciences Research Council BBG022577Biotechnology and Biological Sciences Research Council BB/G022577/1NIGMS NIH HHS R01 GM079429NIGMS NIH HHS R01GM079429
6 · The paper itself

Abstract

Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. EMDataBank.org, a joint effort of the Protein Data Bank in Europe (PDBe), the Research Collaboratory for Structural Bioinformatics (RCSB) and the National Center for Macromolecular Imaging (NCMI), is a global 'one-stop shop' resource for deposition and retrieval of cryoEM maps, models and associated metadata. The resource unifies public access to the two major archives containing EM-based structural data: EM Data Bank (EMDB) and Protein Data Bank (PDB), and facilitates use of EM structural data of macromolecules and macromolecular complexes by the wider scientific community.

Indexed as

Cryoelectron MicroscopyDatabases, FactualDatabases, ProteinMacromolecular SubstancesModels, MolecularProteinsMacromolecular SubstancesProteins

Identifiers

PMID20935055
PMCPMC3013769

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.